Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2898 159 2e-34 seq2601 123 2e-23 >seq2898 Length=39256 Score = 159 bits (176), Expect = 2e-34 Identities = 371/560 (66%), Gaps = 31/560 (6%) Strand=Plus/Minus Query 96996 AAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAAT 97055 || ||||||| | ||||| || || ||| ||| | | || ||| | | |||||||| Sbjct 20831 AATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGAGATTTGTTCTTTCAAGGCATCAAT 20772 Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 ||| | ||||| || ||||| || ||||| ||||| || || || || | | || Sbjct 20771 GTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCCATGTC 20712 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 || | || ||||| | ||| || | || ||| ||||||||||| || || || Sbjct 20711 GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAACGGTACTCC 20652 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAG-----------------C 97218 | ||||||||| || | ||| || || || ||||| | Sbjct 20651 CAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACCGGATCC 20592 Query 97219 TT-TCCATC---------ACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGC 97268 || ||| || || ||||| ||||| || | ||| || || ||||| || Sbjct 20591 TTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGTGGCAAAGC 20532 Query 97269 CATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTT 97328 |||||| || ||| ||||| |||| ||| | |||||||||||| || || Sbjct 20531 CATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTAGGGATT 20472 Query 97329 TGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTG 97388 ||| | | ||| ||| | ||| || |||||||||| |||| |||| ||| | || Sbjct 20471 TGTCTTAAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATAGTCGT- 20413 Query 97389 CTTAAGAC--CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCA 97446 | | || |||| |||| || ||||||||||||||||| ||||||||||| || || Sbjct 20412 CATCGCACGTCTTG-TATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGGGCCCC 20354 Query 97447 AGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTT 97506 || |||||| ||| ||||| ||| || | |||||||||||| | ||||||||| Sbjct 20353 AGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATCCATTA 20294 Query 97507 GCATCCCAAATGTGCACACC 97526 | |||||||| | ||||| Sbjct 20293 CCGTCCCAAATCTTAACACC 20274 >seq2601 Length=276727 Score = 123 bits (136), Expect = 2e-23 Identities = 412/640 (64%), Gaps = 41/640 (6%) Strand=Plus/Plus Query 96912 CATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCATTTGCT---TTAAA 96968 ||||| || || |||| ||| || |||| ||| ||| | || | || ||||| Sbjct 166253 CATTTGGATTCTTGGGTGAGGATTGTAGTCTTC---AATTTCGAAATCTTCTAACTTAAA 166309 Query 96969 ATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCG 97028 |||||||| || ||| | || || ||||| | | ||||| || || ||| || Sbjct 166310 GTCATCAATTTCTGTAATGTCCCTTTTAATCTTTAATTTGGGGAATGGTCTTGGATCTCT 166369 Query 97029 CGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGT 97088 | || || || | | |||||||| |||| | ||| | || ||||| || ||||| Sbjct 166370 TGAAATTTGTTCATTCAAGGCATCAATATGATCCTTATACACATGTGCATCCCCCAAAGT 166429 Query 97089 GTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGA 97148 ||||| || || || || | | |||| ||| | || ||||| | ||| | ||| | Sbjct 166430 ATGAATGAACTCACCCGGTTCCATATCAACGACTTTAGCTATCATTCTAGTCAGTAGCGC 166489 Query 97149 ATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTG 97208 ||| || || ||||| ||||| || || ||||||||| || | ||| || | | Sbjct 166490 ATATGAGGCGATATTAAATGGCACACCGAGCCCCATATCACAGGAACGTTGGTACAGCAA 166549 Query 97209 ACAGGAAAG-------------CTT-----TCCATC---------ACACACATAAAACTG 97241 || ||||| ||| ||| || || |||||||| || Sbjct 166550 GCACGAAAGGCGAGGTTTACCACTTCCACTTCCCTCTTTGGGGAAACTGACATAAAATTG 166609 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 || | || || || || || ||||| || || |||| |||||||| | Sbjct 166610 TGAAAAAATGTGGCATGGCGGTAAGGCCATCTTGTCAAAATCTGCAGGGTTCCAAGCGCT 166669 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTG 97361 ||| | ||||||||||| |||||||| | || | | || | |||||| | || Sbjct 166670 CATGATGATTCTTCTATCATAAGGGTTTGTCTTTAATTTGTGTATAACCTGCTTCAGCTG 166729 Query 97362 ATCAACGCCTTCTCCACCATA---ATTGT-GCTTAAGACCTTGATATTCTGCTCCAAAAT 97417 ||| | |||| ||| ||| || || || || |||| |||| || ||||||| Sbjct 166730 ATCGATACCTTGTCCGGTATAGTCATCGTCGC---AGGTCTTG-TATTTGGCACCAAAAT 166785 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA 97477 | ||||||||||| ||||||||||| || || || ||| ||| ||||| || || | Sbjct 166786 GTCTCCATTGGAACCCATAAACAGGACCCAGATCCCCTACTTTCCTATCCATGAGTCCCA 166845 Query 97478 GCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 ||| || ||||| | ||||||||| | |||||||| Sbjct 166846 TCTTGTCCAAATATTCACGAGATCCATTACCGTCCCAAAT 166885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346746304470830