Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6248 118 1e-21 seq7783 105 8e-18 seq4483 104 3e-17 seq8071 98.7 1e-15 seq3354 89.7 6e-13 seq2811 84.2 3e-11 >seq6248 Length=918 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||| || || ||||| |||| ||||| ||| | Sbjct 802 ACGCAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGCCC 743 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||| ||||| | || | | |||||| Sbjct 742 ATCCTCCAGCTGCTTTCCTGCAAAGATAAGACGCTGTTGGTCTGGTGGGATACCCTCCTT 683 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || || | ||| | | | ||||| |||||||| |||| || | Sbjct 682 GTCC-TGAATCTTGGTCTTCACGTTGTCGATAGTGTCTGAAGATTCCACCTCGAGTGTAA 624 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| | ||||| || ||||||||||| Sbjct 623 TCGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 587 >seq7783 Length=540 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| ||||| || | || |||||| || || ||||| || | Sbjct 224 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 165 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || || || || ||||||||||| |||| || Sbjct 164 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 105 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| || |||| ||| | | | ||||| || || || Sbjct 104 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGAC 46 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 43180 |||| |||||||| ||||| || || ||||| |||||||| || Sbjct 45 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTG 1 >seq4483 Length=688 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 450 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAA 509 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 510 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 569 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| ||||| || | ||||| || || ||||| || ||||| || Sbjct 570 GTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGAC 629 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 630 GAAGATCTGCAT 641 >seq8071 Length=459 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || || |||||||| || || || Sbjct 243 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 302 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 303 GATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 361 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| ||||| || | ||||| | Sbjct 362 TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 421 Query 43171 CAAAGATTTGCATTTT 43186 | || |||||||| || Sbjct 422 CGAAAATTTGCATGTT 437 >seq3354 Length=695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 275 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 334 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | || |||||||||| ||| | || | |||| Sbjct 335 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 393 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | ||||| || ||||| |||| || ||||| || ||||| || ||||| | Sbjct 394 TGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTCTTACCCGTCAGAGTCTTGA 453 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 454 CGAAAATCTGCAT 466 >seq2811 Length=58406 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||||||||| || | || |||||||| || ||||| |||| | Sbjct 27425 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 27484 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | |||| |||||||||||||| || || || | || || || || | || Sbjct 27485 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 27544 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||| | | | ||| | | | |||||| ||||| || Sbjct 27545 ATACCTTCCTTGT-CTTGAATTTTCGACTTAACGTTGTCGATGGTGTCGGAAGATTCAAC 27603 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || |||||||| || || | ||||| || || || ||||| Sbjct 27604 CTCTAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 27651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571753849485320