Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015-
12-30] 8,919 sequences; 28,078,724 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq6248 118 1e-21
seq7783 105 8e-18
seq4483 104 3e-17
seq8071 98.7 1e-15
seq3354 89.7 6e-13
seq2811 84.2 3e-11
>seq6248
Length=918
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| ||||| || |||||| || || ||||| |||| ||||| ||| |
Sbjct 802 ACGCAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGCCC 743
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || || || || || ||||| ||||| | || | | ||||||
Sbjct 742 ATCCTCCAGCTGCTTTCCTGCAAAGATAAGACGCTGTTGGTCTGGTGGGATACCCTCCTT 683
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| | || || | ||| | | | ||||| |||||||| |||| || |
Sbjct 682 GTCC-TGAATCTTGGTCTTCACGTTGTCGATAGTGTCTGAAGATTCCACCTCGAGTGTAA 624
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || |||||||| | ||||| || |||||||||||
Sbjct 623 TCGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 587
>seq7783
Length=540
Score = 105 bits (116), Expect = 8e-18
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| | | |||||| ||||| || | || |||||| || || ||||| || |
Sbjct 224 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 165
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || |||||||| || || || || ||||||||||| |||| ||
Sbjct 164 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 105
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| || |||||||| ||| || |||| ||| | | | ||||| || || ||
Sbjct 104 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGAC 46
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 43180
|||| |||||||| ||||| || || ||||| |||||||| ||
Sbjct 45 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTG 1
>seq4483
Length=688
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 450 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAA 509
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | ||||||||||||| || | || |||||||||| ||| || |||| |
Sbjct 510 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 569
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| ||| ||||| || | ||||| || || ||||| || ||||| ||
Sbjct 570 GTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGAC 629
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 630 GAAGATCTGCAT 641
>seq8071
Length=459
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| |||| || || || | || || |||||||| || || ||
Sbjct 243 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 302
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 303 GATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 361
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || | ||||| |
Sbjct 362 TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 421
Query 43171 CAAAGATTTGCATTTT 43186
| || |||||||| ||
Sbjct 422 CGAAAATTTGCATGTT 437
>seq3354
Length=695
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 275 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 334
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||||||||| | || | || |||||||||| ||| | || | ||||
Sbjct 335 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 393
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | ||||| || ||||| |||| || ||||| || ||||| || ||||| |
Sbjct 394 TGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTCTTACCCGTCAGAGTCTTGA 453
Query 43171 CAAAGATTTGCAT 43183
| || || |||||
Sbjct 454 CGAAAATCTGCAT 466
>seq2811
Length=58406
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| || | ||||||||| || | || |||||||| || ||||| |||| |
Sbjct 27425 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 27484
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || | |||| |||||||||||||| || || || | || || || || | ||
Sbjct 27485 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 27544
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| | ||||||| | ||| |||| | | | ||| | | | |||||| ||||| ||
Sbjct 27545 ATACCTTCCTTGT-CTTGAATTTTCGACTTAACGTTGTCGATGGTGTCGGAAGATTCAAC 27603
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | || |||||||| || || | ||||| || || || |||||
Sbjct 27604 CTCTAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 27651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571753849485320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |