Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015-
12-30] 8,919 sequences; 28,078,724 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2898 134 3e-26
seq2421 129 1e-24
seq3379 122 2e-22
seq3582 84.2 4e-11
>seq2898
Length=39256
Score = 134 bits (148), Expect = 3e-26
Identities = 229/327 (70%), Gaps = 4/327 (1%)
Strand=Plus/Plus
Query 35295 ATACAGACGCCAAAGAATTGGCCAAG-AAGAAGATACACATCTGGAACGCTAATGGGTCG 35353
|||||||||| || |||| | || ||| | || | || ||| ||| |||||| ||
Sbjct 20245 ATACAGACGCTAACCTATTGTCTGAGCAAGGTGTTA-AGATTTGGGACGGTAATGGATCT 20303
Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413
|| |||| ||| || | | ||||| | ||||| || |||||| |||| |||||
Sbjct 20304 CGTGAATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTT 20363
Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473
|| ||||| |||||| | |||||||||||| |||| | || || | ||| ||||||
Sbjct 20364 TATGGATTTCAATGGAGGCATTTTGGTGCTAAATACAAGACGTGCGATGACGACTATACT 20423
Query 35474 GGAAAGGGTATTGATCAATTG-GCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGA 35532
||| | ||||||||||||||| || || | | | | | ||| |||||| | ||
Sbjct 20424 GGACAAGGTATTGATCAATTGAAACAGGTTATTCATAAACTTAAGA-CAAATCCCTACGA 20482
Query 35533 TAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCC 35592
|||||| || ||||||| || ||||| || ||| || || |||||| | || ||
Sbjct 20483 TAGAAGAATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGCCACC 20542
Query 35593 ATGCCACATGACTGCTCAATTTTATGT 35619
|||||| || | | || || |||||
Sbjct 20543 ATGCCATATTTTTTCACAGTTCTATGT 20569
>seq2421
Length=19268
Score = 129 bits (142), Expect = 1e-24
Identities = 298/444 (67%), Gaps = 15/444 (3%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| | ||||||| |||| || ||| | || || ||||||||||||
Sbjct 4108 GTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGG 4049
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| || || || ||||| |||| ||| | |||| ||||| || || || | ||| |||
Sbjct 4048 TTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGAC 3989
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|||||| | || ||||||||||||| || |||| | |||| || | |
Sbjct 3988 GAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---ACAA 3936
Query 102098 TCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153
| ||| || ||| ||| |||||||||| || || || |||||||||| ||
Sbjct 3935 ACCAGACCCAGCCATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATA 3876
Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213
|| | || | || ||| || | || |||||| | || |||| ||| ||
Sbjct 3875 CTTCTTGGACGCCTTACCAGTTGCTTTGCTAGGTATGAACGCTGACTTAATGAACCAATA 3816
Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271
| |||| || || || || | ||| ||||||| | || || ||||| |||| ||
Sbjct 3815 CGTTGAGTTCGTCGCCGACAGACTGTTGGTTGCTTTCGGTAACAAGAAA--TACTACAAG 3758
Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331
|| ||||||||| |||||||| || || ||| | | |||||| ||||| ||
Sbjct 3757 GTCGAAAACCCCTTCGATTTCATGGAAAACATCTCCTTGGCCGGTAAGACTAACTTCTTC 3698
Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355
||||||||||| | || || |||
Sbjct 3697 GAAAAGAGAGTTTCTGACTACCAA 3674
>seq3379
Length=20444
Score = 122 bits (134), Expect = 2e-22
Identities = 271/402 (67%), Gaps = 15/402 (4%)
Strand=Plus/Minus
Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019
||||| ||||| |||||| | ||||| || ||||| |||| || | |||| ||||||
Sbjct 804 TTCGCCTCCATCTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGGTTGACCTTCTCCAAC 745
Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAG 102079
||||| || | || ||||||||| | || ||||||||| || || |||| |
Sbjct 744 GAGTTGATCTGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTCGCCCA- 686
Query 102080 GGTTTTGTTGATA---CCCCATCAAGAGAAAGGATTCTTGAAATT-GTCACTGAAGCCGT 102135
|||| || || | | || | | || |||| | ||||| || |||||
Sbjct 685 ---TTTGAAGAACAAGCCGGACCCAGCCATCG---TCGAGAAAATCGTCACCGAGGCCGT 632
Query 102136 CCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTG 102195
| || |||||| || || || || |||| || || | || |||||
Sbjct 631 CGAGATCGAACAAAGATACTTCCTAGACGCCTTGCCAGTCGCCTTGCTAGGTATGAATGC 572
Query 102196 CAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--A 102253
| | ||||||| ||||||| | || || || ||||| | ||| ||||| | | || |
Sbjct 571 CGACTTGATGAACCAGTACGTCGAGTTCGTCGCAGACAGACTGTTGGTCGCCTTCGGTAA 512
Query 102254 CTAGAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAG 102313
| |||| | |||| || || |||||||||| |||||||| || |||||| | |
Sbjct 511 CAAGAA--GTACTACAAGGTCGACAACCCCTTCGATTTCATGGAAAACATTTCCTTGGCC 454
Query 102314 AATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355
|||||||||||| || |||||||||||| |||| || |||
Sbjct 453 GGTAAGACCAACTTCTTCGAAAAGAGAGTCTCCGACTACCAA 412
>seq3582
Length=113103
Score = 84.2 bits (92), Expect = 4e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
|| || ||||||||||| || || || ||| || | ||| || |||||||| ||||||
Sbjct 81630 CCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATG 81571
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910
|| || | | | | | ||||| || || || | ||| || |||| | || ||
Sbjct 81570 GAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGC-GTACCGGC 81512
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
|||||| |||||||||||||| ||||| || || | |||||| | | || || |
Sbjct 81511 ATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTT 81452
Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCAT 95018
| || || | ||| || |||||||| || | |||||||||||
Sbjct 81451 CAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCAT 81404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989470915597645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |