Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2811 129 4e-25 seq4029 104 2e-17 seq4535 100 2e-16 >seq2811 Length=58406 Score = 129 bits (142), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| |||||||| || | ||| ||||| || | |||||||| ||| Sbjct 27197 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGAC 27256 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || |||||||||||||||| |||||||| | || Sbjct 27257 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 27316 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||| || || ||| | ||| |||||| || ||| |||||| || || | Sbjct 27317 ATACCTTCCTTGTC-TTGAATTTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAA 27374 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 27375 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 27423 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||| | || | ||| |||||| || | || ||||| ||| Sbjct 26969 CCACCCCTCAATCTCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTATAATCAGAC 27028 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || |||||||||||||||| |||||||| | || Sbjct 27029 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 27088 Query 43003 ACACCTTCTTTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | |||||| || || ||| || || ||||| || ||| |||||| || || Sbjct 27089 ATACCTTCCTTGTC-TTGAATTTTCGAC---TTGACGTTGTCAATAGTGTCGGAAGATTC 27144 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 27145 AACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 27195 >seq4029 Length=108955 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | |||| ||||||||| | ||||| || ||| Sbjct 14295 CCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 14236 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| |||||||| || || ||||| ||||||| ||||| || | || Sbjct 14235 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 14176 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| ||||| || ||| ||||| || || || Sbjct 14175 ATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTGTCTGAAGATTCAACT 14116 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 14115 TCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 14066 >seq4535 Length=12927 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 8316 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8257 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 8256 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8197 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 8196 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8137 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 8136 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381328145005302