Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015-
12-30] 8,919 sequences; 28,078,724 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq2811 122 7e-23
seq3354 87.8 2e-12
seq8630 84.2 2e-11
>seq2811
Length=58406
Score = 122 bits (134), Expect = 7e-23
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || | ||| || ||||| || ||||| || |||||||| |||||||| ||||
Sbjct 27424 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 27483
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || |||| || |||||||||||| | | || || | || ||||| ||
Sbjct 27484 CAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 27543
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| || ||||||||| ||||||| ||| | | | || ||||| |||| ||| ||
Sbjct 27544 GATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCG--ATGGTGTCGGAAGATTCA 27601
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | |||||||||||||||||| | ||| || || |||||||||||
Sbjct 27602 ACCTCTAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 27651
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || | ||| || ||||| || ||||| || ||||| ||||||||||||||||
Sbjct 27196 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGA 27255
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || |||| ||||| ||||||||| | |||| || | || ||||| ||
Sbjct 27256 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGG 27315
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674
| || ||||||||| ||||| | ||| | |||| | || || |||| ||| |
Sbjct 27316 AATACCTTCCTTGTCTTGAATTT--TACTT--TTGACGTTGTCAATAGTGTCGGAAGATT 27371
Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||| | ||||| || || || || |||||||| || ||||| |||||
Sbjct 27372 CAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 27423
>seq3354
Length=695
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/199 (71%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || |||||||| || | || || || ||||||| |||||||| ||| ||
Sbjct 275 CTCCTTCTGGATGTTGTAGTCCGA-AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGA 333
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || | |||||||| || || | | ||||||||| ||| || ||||| |
Sbjct 334 AGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACAT 393
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
||||| || | |||||| ||||| || ||||| ||||| || ||||| || |
Sbjct 394 TGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTCTTACCCGTCAGAGTCTTGA 453
Query 48714 CAAAAATCTGCATC-GTGT 48731
| |||||||||||| ||||
Sbjct 454 CGAAAATCTGCATCTGTGT 472
>seq8630
Length=306
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || ||||||||||||| | | || || | ||||| || ||||| ||| ||
Sbjct 299 CTCCTTCTGGATGTTGTAATCAGAGAGAGTG-CGACCATCCTCGAGTTGCTTTCCGGCGA 241
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
|||| | ||| || ||||| || | | ||||||||| ||| || ||| | |
Sbjct 240 AAATGAGACGTTGTTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTGCTCTTAACAT 181
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| ||||| |||| |||||| ||||| || ||||| || || || ||||| || |
Sbjct 180 TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGA 121
Query 48714 CAAAAATCTGCAT 48726
| || ||||||||
Sbjct 120 CGAAGATCTGCAT 108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421205409862919
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |