Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2811 122 7e-23 seq3354 87.8 2e-12 seq8630 84.2 2e-11 >seq2811 Length=58406 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| || ||||| || ||||| || |||||||| |||||||| |||| Sbjct 27424 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 27483 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| || |||||||||||| | | || || | || ||||| || Sbjct 27484 CAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 27543 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || ||||||||| ||||||| ||| | | | || ||||| |||| ||| || Sbjct 27544 GATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCG--ATGGTGTCGGAAGATTCA 27601 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||||||||||||||| | ||| || || ||||||||||| Sbjct 27602 ACCTCTAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 27651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| || ||||| || ||||| || ||||| |||||||||||||||| Sbjct 27196 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGA 27255 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || |||| ||||| ||||||||| | |||| || | || ||||| || Sbjct 27256 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGG 27315 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | || ||||||||| ||||| | ||| | |||| | || || |||| ||| | Sbjct 27316 AATACCTTCCTTGTCTTGAATTT--TACTT--TTGACGTTGTCAATAGTGTCGGAAGATT 27371 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| | ||||| || || || || |||||||| || ||||| ||||| Sbjct 27372 CAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 27423 >seq3354 Length=695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || ||||||| |||||||| ||| || Sbjct 275 CTCCTTCTGGATGTTGTAGTCCGA-AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGA 333 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || || | | ||||||||| ||| || ||||| | Sbjct 334 AGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACAT 393 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 ||||| || | |||||| ||||| || ||||| ||||| || ||||| || | Sbjct 394 TGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTCTTACCCGTCAGAGTCTTGA 453 Query 48714 CAAAAATCTGCATC-GTGT 48731 | |||||||||||| |||| Sbjct 454 CGAAAATCTGCATCTGTGT 472 >seq8630 Length=306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||||| | | || || | ||||| || ||||| ||| || Sbjct 299 CTCCTTCTGGATGTTGTAATCAGAGAGAGTG-CGACCATCCTCGAGTTGCTTTCCGGCGA 241 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| | ||| || ||||| || | | ||||||||| ||| || ||| | | Sbjct 240 AAATGAGACGTTGTTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTGCTCTTAACAT 181 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| |||||| ||||| || ||||| || || || ||||| || | Sbjct 180 TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGA 121 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 120 CGAAGATCTGCAT 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421205409862919