Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq8857 520 1e-142 seq7678 259 5e-64 seq7307 255 7e-63 seq7318 114 1e-20 >seq8857 Length=8770 Score = 520 bits (576), Expect = 1e-142 Identities = 711/988 (72%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || ||| | ||| |||| ||||||||||| || Sbjct 6430 TTCTGTAACTGGATAACCAGCACTGAAAACCGCCTTTACATTGGATGGTTTGGTGTTTTG 6371 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || || |||| ||||| |||||||| Sbjct 6370 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATCATAGCCTTCATTGCTGCTCC 6312 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||||| | || || ||||| Sbjct 6311 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTGCTTTACGGAAACAA 6252 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || ||||| ||||| | |||| |||| || || || || ||||| ||||| || Sbjct 6251 TATTATCTCCGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTATCCAAT 6192 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||| || || | || || ||||| ||||| || |||||||| || || || | Sbjct 6191 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 6132 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | | || | || ||||||||| | |||||||||| | | | Sbjct 6131 TCTACACTTCTTACTAGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTGAGTTTCCG 6072 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| | |||||||| ||| || || ||||| ||||| | || || ||| Sbjct 6071 TCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACTGC 6012 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 6011 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGCAT 5952 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 || ||||| |||||||| ||| | || ||||| || ||||||||||| || |||||||| Sbjct 5951 TTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCC 5892 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 || || ||| ||||||||| ||| | || ||||| || || ||||| ||||| || Sbjct 5891 ATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTATTTAGTGCTATGCATGG 5832 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| | || || ||| | | ||||| || || || || || || | || | || Sbjct 5831 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCTAATGAAGG 5772 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || || ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || || Sbjct 5771 TTACAAATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGG 5712 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| |||||||| |||||| ||||||||||||||||| ||||| |||||| | || Sbjct 5711 CCGATTGATCTTCCAATATGCAAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAGC 5652 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | || || || || | ||||| || || | ||||| |||| ||||| ||||| Sbjct 5651 TGCTTGGCCCGTTATCGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 5592 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT--GCAA--ACGGAAAGATTGTAC 171560 | || || ||||| ||||| ||||| || || ||| ||| || | | ||| Sbjct 5591 TTTAAATGGTTTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 5532 Query 171561 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 | || | ||| | ||||| | || |||||||| |||||||||||||||||| | | Sbjct 5531 C----TGAGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 5476 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 |||| || |||||||| ||||||||||| Sbjct 5475 ATGCTCATAACTTCCCTCTAGACCTAGC 5448 >seq7678 Length=557 Score = 259 bits (286), Expect = 5e-64 Identities = 284/378 (75%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 171314 CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 171373 ||||||||||| || ||||||||||||||||||||||| || ||||| || ||||| || Sbjct 497 CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACCTACAACATCGTAGCTGCACAC 438 Query 171374 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACAC 171433 || ||||| ||| | || |||||||| || || || ||||||||| |||||| | ||| Sbjct 437 GGTTACTTTGGTCGGTTGATCTTCCAATACGCTTCCTTCAACAACAGCCGTTCACTGCAC 378 Query 171434 TTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACA 171493 |||||| | |||| || || ||| || || | ||||| ||| || | |||||| | ||| Sbjct 377 TTCTTCTTGGCTGCATGGCCAGTAATCGGTATCTGGTTTACCGCTTTAGGTATCAGCACA 318 Query 171494 ATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAG 171553 ||||| |||||||| |||||||||||||||||||||||||| | ||| | | || Sbjct 317 ATGGCGTTCAACCTGAACGGATTCAACTTCAACCAATCAGTAATCGATTCTCAAGGTCGC 258 Query 171554 ATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCAT 171613 | | | || |||| || || | ||| | || ||| | || |||||||| ||||| Sbjct 257 GTCATCGCTACTTGGGCTGACGTAATCAACCGCGCTAACTTGGGTATGGAAGTCATGCAC 198 Query 171614 GAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACAGTTGCA 171673 || | || || ||||||||||| ||||| | || ||| ||| | | | || || Sbjct 197 GAGCGTAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGAAGTTGCTCCTGTGGCT 138 Query 171674 TTAACTGCACCTTCAATC 171691 |||||||||||| ||||| Sbjct 137 TTAACTGCACCTGCAATC 120 >seq7307 Length=548 Score = 255 bits (282), Expect = 7e-63 Identities = 352/494 (71%), Gaps = 25/494 (5%) Strand=Plus/Plus Query 172341 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 172400 || |||||||| ||||| ||| |||| |||||||| || | |||||||| || || || Sbjct 3 CACATGATGGGAGTAGCGGGTGTACTCGGTGGAGCGCTATTGTGTGCCATTCACGGAGCC 62 Query 172401 ACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCT 172460 |||||| | ||||| || | ||||||| ||||| ||| Sbjct 63 ACAGTAGAAAACACCTTATTTGAAGACGG------------TGAAGC---------ATCC 101 Query 172461 ACAACTTTCAGAGCATTCGATCCTACAC--AGGAAGAAGAAACTTATAGTATGATTACTG 172518 | ||| ||| | || ||| | |||||| | | ||||||||| || ||| | || | Sbjct 102 AAAACCTTCCGCGCCTTCAA--CTACACCCAAGCAGAAGAAACCTACTCCATGGTGACAG 159 Query 172519 CTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACT 172578 | ||| ||||||||||||||||||| ||||| || || || |||||| | | ||||||| Sbjct 160 CGAACCGATTCTGGTCACAGATATTCGGTATCGCCTTCTCCAACAAACGGTGGTTACACT 219 Query 172579 TCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTC 172638 || | ||| |||| ||||| |||| || |||||| | || |||| ||||| ||| Sbjct 220 TCTTCATGCTGTTTGTACCAGTCACAGGCTTGTGGATGGCGTCAGTAGGAATCGTGGGTT 279 Query 172639 TTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACC 172698 | ||| | |||||| | || |||||||| ||||| ||||| | | ||||||||||||| Sbjct 280 TAGCATTGAACCTCCGGGCTTACGACTTCGTATCCCAAGAATTGCGGGCAGCAGAAGACC 339 Query 172699 CAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGA 172758 |||| |||||||| ||||| || || |||||| | || || || ||||| | || |||| Sbjct 340 CAGAATTTGAAACATTCTATACCAAAAACATTTTGCTGAACGAGGGTATCCGCGCTTGGA 399 Query 172759 TGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAG 172818 || | || ||||| || || || | ||||| |||||||| || || | || || | Sbjct 400 TGGCTCCTCAAGATCAGCCTCACGAACAATTTGTATTCCCAGAGGAGGTTCTACCTCGTG 459 Query 172819 GCAACGCACTATAA 172832 | ||||| || ||| Sbjct 460 GTAACGCTCTCTAA 473 >seq7318 Length=447 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 172221 TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCA 172280 |||||||| |||||| | |||||| | ||||||| || || ||| |||||||| ||| Sbjct 46 TTTCTAATTTATCCACTGGGTCAGGCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCA 105 Query 172281 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 172340 || || ||||| | || |||| | || || || || ||| || | || |||||| Sbjct 106 GCTATATTTCGCTTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCATTT 165 Query 172341 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 172400 ||||||||||| || || ||| || | || | || | ||||| || || |||||||| Sbjct 166 CATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCG 225 Query 172401 ACAGTACAGAACACATTGTATGAAGA 172426 || ||| | || || || | |||||| Sbjct 226 ACGGTAGAAAATACTTTATTTGAAGA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570205222157160