Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6248 95.1 1e-14 seq8071 93.3 3e-14 seq7783 82.4 6e-11 seq4845 82.4 6e-11 seq4483 82.4 6e-11 >seq6248 Length=918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| || || | | ||||| | ||| Sbjct 561 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGGCCATCCTCAAGTTGC 502 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 || || ||| | || || ||||||||||| ||| | |||||| ||||| ||| ||| Sbjct 501 TTTCCAGCAAAGATCAGACGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTG 442 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | | ||||||| || || || | |||||||| || || || Sbjct 441 GT-CTTGACGTTGTCGATAGTGTCGGAGGATTCAACCTCGAGTGTGATGGTCTTGCCAGT 383 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 382 AAGTGTCTTGACGAAGATCTGCAT 359 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| | ||| | ||||| | ||| Sbjct 333 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCGAGTTGC 274 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-CGGCAATTTG 16851 ||||| || | || | ||||||||||| ||| | |||||| |||| | | | ||| Sbjct 273 TTGCCGGCGAAGATCAAGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTG 214 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | | ||||| | ||| || | |||||||| || ||||| Sbjct 213 GT-CTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 155 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 154 GAGGGTCTTGACGAAGATCTGCAT 131 >seq8071 Length=459 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| | | ||| | | ||| Sbjct 223 AGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCC 282 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | ||||| ||||| ||||| ||| | |||||| ||||| Sbjct 283 TCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 342 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | |||||| | ||| || | ||||||||| Sbjct 343 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 402 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAG 16942 || ||||||| || ||||| ||||| ||||| ||| || Sbjct 403 TTGCCGGTCAAGGTCTTGACGAAAATTTGCATGTTGAAG 441 >seq7783 Length=540 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || ||||| |||||||| || ||||||||||||| Sbjct 224 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 165 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | || || || ||| | ||||| ||||| || || || Sbjct 164 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 105 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | | ||||| || ||| Sbjct 104 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGAGGACTCGA 47 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTG 16932 || | ||||||||| || ||||| || || || ||||| ||||| Sbjct 46 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTG 1 >seq4845 Length=48244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || |||| |||| || || || ||||||||||| ||||| ||||| | | Sbjct 16517 CCACCTCTCAGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGAC 16576 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| ||| || || ||| |||| || | |||||||| ||| Sbjct 16577 AAAGTTCTACCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGA 16636 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | ||| || | | | | ||||| | ||| Sbjct 16637 ATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACC 16696 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCTTAT 16948 || | ||| ||||| || || ||||| || ||||| || || ||||| ||| ||||| Sbjct 16697 TCTAAGGTTATGGTCTTACCAGTCAGTGTCTTGACGAAGATTTGCATAGTGT---CTTAT 16753 Query 16949 T 16949 | Sbjct 16754 T 16754 >seq4483 Length=688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| | ||| | ||||||| | || Sbjct 439 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 498 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-CGGCAATTTG 16851 ||||| || | || | ||||| ||||| || | |||||| |||| | | | ||| Sbjct 499 TTGCCTGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 558 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | | |||||| | |||| || | |||||| || || || || Sbjct 559 GT-CTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGT 617 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 618 GAGGGTCTTGACGAAGATCTGCAT 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405043966807810