Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3379 223 7e-53 >seq3379 Length=20444 Score = 223 bits (246), Expect = 7e-53 Identities = 584/874 (67%), Gaps = 28/874 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCAT-GTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||| || |||| || |||||| | || ||||||| || || ||| |||||| || Sbjct 1272 ATCCAGTACCACGAGATCTGG-CAATCGTACAAGCGTGCCGAGGCCTCTTTCTGGACTGC 1214 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTC---ACTGTCTGAGAACGA 42400 |||||| || || || ||||||| | | |||| | | || || ||||| Sbjct 1213 CGAGGAAATCGATTTGTCCAAGGATATCCATGACTGGAACAACAGAATGAACGAAAACGA 1154 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 || ||| ||| || || | || ||||||||||||||||| ||||| || ||||| || Sbjct 1153 AAGGTTCTTCATCTCAAGAGTCCTTGCCTTCTTCGCCGCCTCCGACGGTATTGTCAACGA 1094 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||| ||| | | ||| | ||||| ||| | || || | |||||||| Sbjct 1093 AAACTTGGTCGAGAATTTCTCCACCGAGGTCCAGATCCCGGAAGCCAAGAGTTTCTACGG 1034 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 ||||| || || || || ||| | || || || ||| || || || | || || Sbjct 1033 TTTCCAAATCGCTATCGAAAACATTCATTCCGAAACCTACTCCTTGTTGATCGATACCTA 974 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| |||||| || || | ||||||| ||||| || || || || || Sbjct 973 CATCAAGGATCCAAAGGAAAGTGAATTCTTGTTCAACGCCATCGACACCATCCCAGAAAT 914 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC-GACGCAACGTTCGGCG 42699 ||||||| || ||||| || | |||||| | || | | ||||| |||||| | Sbjct 913 TTGCGAGAAGGCCGAATGGGCCCTTAGATGGATCCA-AGACGCAGACGCGCTGTTCGGTG 855 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 | || || || ||||| | || |||| || | |||||||| || |||||||||||| Sbjct 854 AAAGACTAGTCGCCTTCGCGTCCATCGAAGGTGTTTTCTTCTCCGGGTCCTTCGCCTCCA 795 Query 42760 TCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||| | ||| ||| |||| | ||||||||| | |||||||| ||||| | ||| Sbjct 794 TCTTCTGGTTGAAGAAGAGAGGTAT-GATGCCCGGGTTGACCTTCTCCAACGAGTTGATC 736 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 |||| ||||| || |||| | ||||||||||| | ||||| | ||| | | | Sbjct 735 TGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTCGC---CCATTTGAAG 679 Query 42879 CACAAGCCCTCGAAGGAGC--GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA-- 42934 ||||||| || ||| ||| | ||| |||| |||||||| |||||||| Sbjct 678 AACAAGCC--GGACCCAGCCATCGTCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAAC 621 Query 42935 GAAG-GAGTTCCTCACGCAGTCGC--TGCCCGTGTCCCTGGTCGGCATGAACCACGACCT 42991 ||| | ||||| || ||| |||| || || || | || ||||| |||| | Sbjct 620 AAAGATACTTCCT-----AGACGCCTTGCCAGTCGCCTTGCTAGGTATGAATGCCGACTT 566 Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG 43051 ||| | ||||| || ||| |||||| ||| || || | | ||| || Sbjct 565 GATGAACCAGTACGTCGAGTTCGTCGCAGACAGACTGTTGGTCGCCTTCGGTAACAAGAA 506 Query 43052 CCTCTACAA-CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGA 43110 |||||| || | ||||||||| || ||||| ||||| || |||| || |||| Sbjct 505 GTACTACAAGGTCGAC-AACCCCTTCGATTTCATGGAAAACATTTCCTTGGCCGGTAAGA 447 Query 43111 CCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||| ||||| ||| | ||| |||||||||| Sbjct 446 CCAACTTCTTCGAAAAGAGAGTCTCCGACTACCA 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944233917983440