Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq8857 630 9e-176 seq7678 378 9e-100 seq7318 260 2e-64 seq7307 246 4e-60 >seq8857 Length=8770 Score = 630 bits (698), Expect = 9e-176 Identities = 733/986 (74%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 7536 CAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGAC 7595 |||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 5446 CAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGT 5505 Query 7596 CAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGG 7655 ||| ||||| | | || || ||||| || | ||||||||||||| ||||| | | Sbjct 5506 TAGCGCGGTTAATGATATCAGCTCAGGTATTAATTACACGACCTTGACTATCAACTACAG 5565 Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715 | || ||||| |||||||| || | ||||| ||||| || |||| ||| | |||||| | Sbjct 5566 ATTGATTGAAATTGAAACCATTTAAATTGAAAGCCATAGTACTAATACCTAAAGCAGTAA 5625 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 |||| || || | ||| ||||| || || | |||||| || | ||||| |||||||||| Sbjct 5626 ACCAAATACCGATAACGGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGA 5685 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835 | || ||||||||||||| || ||||| || || |||||||| || || || || | Sbjct 5686 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAG 5745 Query 7836 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895 | ||||| ||||||||||| || ||||| | || || ||| || || ||||| | Sbjct 5746 TTTCTTCCTCTTGACCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGTAGTTTCCC 5805 Query 7896 GAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955 | || | ||| ||||| | ||||||||||| ||||| || || || |||||||| | Sbjct 5806 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCACCAAATA 5865 Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015 ||||||| || || | |||||| || |||||||| ||||||||||| || || ||||| | Sbjct 5866 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATA 5925 Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075 ||| ||| ||||||| |||||||| ||||| ||||||||| | ||||| || |||| Sbjct 5926 CAATCATAAAGTTGAAAGTACCAGAAATGCCTAGAGGCATACCATCAGAAAAGCTTCCTT 5985 Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135 |||| | || || | | ||| ||||||| || || ||||| ||||| || || || | Sbjct 5986 GACCAATTGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATACGCAA 6045 Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195 || ||||| || |||||||| |||||| || ||||||||||||||||||||||| Sbjct 6046 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATGTAAC 6105 Query 8196 CATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255 | | ||| | | |||||| | | || || | |||||||||| ||||| | || Sbjct 6106 AAGCTACACCTAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 6165 Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315 | ||||||| ||| || |||||||| || ||||| ||||| | ||| ||||| ||||| Sbjct 6166 ATTCATCAACAGATGCCGCTTCCCATATTGGATAAAAGTGCAAACCGATAGCCGCAGAAG 6225 Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375 ||||| || ||||| ||||| || ||||| || || | | || |||| || |||| Sbjct 6226 TAGGAATAATGGCACCGGAGATAATATTGTTTCCGTAAAGCAAAGATCCAGAAACAGGTT 6285 Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATA 8434 |||| || || ||||| || || ||||||||||| | ||| || | ||| || ||| | | Sbjct 6286 CACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATGATAAATACAGA-A 6344 Query 8435 GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTG 8494 | || | | | ||||| ||||||| ||||| ||||| || | || || || || Sbjct 6345 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGGCGGTTT 6404 Query 8495 TTGGTGGAGGTTACCCAGTTACAGAA 8520 | ||| ||||| |||||||||||| Sbjct 6405 TCAGTGCTGGTTATCCAGTTACAGAA 6430 >seq7678 Length=557 Score = 378 bits (418), Expect = 9e-100 Identities = 341/429 (79%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 7499 GCAGGTGCTTTGAGAGCAACAGGAGTGTTCTCAGCAGCAGCAAGGTCAAGAGGGAAGTTG 7558 |||||||| | | ||| ||||||| ||| ||||||| | ||| | ||||||||| Sbjct 124 GCAGGTGCAGTTAAAGCCACAGGAGCAACTTCACCAGCAGCCAAGTCTAAGGGGAAGTTG 183 Query 7559 TGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTCTGCC 7618 ||||| ||||||||||||||||||||||| || | ||| ||||||| ||||| ||| Sbjct 184 TGAGCGTTACGCTCGTGCATGACTTCCATACCCAAGTTAGCGCGGTTGATTACGTCAGCC 243 Query 7619 CAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTTG 7678 || || | ||| ||||||||| ||| || | || |||||||||||||| ||||| Sbjct 244 CAAGTAGCGATGACGCGACCTTGAGAATCGATTACTGATTGGTTGAAGTTGAATCCGTTC 303 Query 7679 AGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCAT 7738 |||||||| ||||| ||||| | ||| | ||| || |||||||| || | ||||||||| Sbjct 304 AGGTTGAACGCCATTGTGCTGATACCTAAAGCGGTAAACCAGATACCGATTACTGGCCAT 363 Query 7739 GCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGA 7798 || || | |||||||||||| |||||| ||||||||| ||||||||||||||||||| Sbjct 364 GCAGCCAAGAAGAAGTGCAGTGAACGGCTGTTGTTGAAGGAAGCGTATTGGAAGATCAAC 423 Query 7799 CGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTA 7858 ||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| Sbjct 424 CGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAGGTTTCTTCTTCTTGTCCGAACTTG 483 Query 7859 TAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGC 7918 ||||| ||||| || || || | || ||||||||||| |||| || || || || | Sbjct 484 TAACCGTAGTTTTGTGATTCGGTTTCTGTGGTTTCACGTACCAAGGAGGAAGTAACCAAG 543 Query 7919 GAACCATGC 7927 ||||| ||| Sbjct 544 GAACCGTGC 552 >seq7318 Length=447 Score = 260 bits (288), Expect = 2e-64 Identities = 264/341 (77%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 6555 GAGACCAGAAA-CGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCA 6613 ||||| ||||| || ||||| |||||||| ||||| || || || |||| || || | | Sbjct 340 GAGAC-AGAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 282 Query 6614 AACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCA 6673 || ||| ||| ||||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 281 AAAGCCCGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACCGTCGCA 222 Query 6674 CCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAAC 6733 || |||||||| || |||| || | || || | ||| || || |||||||||||||| Sbjct 221 CCATGAATAGCGCATAGCAGGGCGGCGCCCAATACACCGGCAACTCCCATCATATGAAAT 162 Query 6734 GGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCA 6793 ||||| | ||||| || || || || || | || || | |||||| ||||| ||||| Sbjct 161 GGGTTCAAGGTCCAATTATGAAACCCTTGAAAAAATAGGATGAAGCGAAATATAGCTGCT 102 Query 6794 ACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACA 6853 |||||||| |||||||| ||||||| | ||| || || ||||| || ||||| ||| Sbjct 101 ACACCAAAACTAGGCGCAAAAAACCAACCAGCCTGACCCAGTGGATAAATTAGAAATACA 42 Query 6854 GACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATT 6894 || ||||| |||||||| ||||||||||| ||||||||||| Sbjct 41 GAAACAAAAACAGCAATTGGACCAGAAAATGCGATTGCATT 1 >seq7307 Length=548 Score = 246 bits (272), Expect = 4e-60 Identities = 346/481 (72%), Gaps = 10/481 (2%) Strand=Plus/Minus Query 6254 GTATATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGT 6313 || ||| | |||||||| || | || | || || || || |||||||| | ||| || Sbjct 478 GTCTATTAGAGAGCGTTACCACGAGGTAGAACCTCCTCTGGGAATACAAATTGTTCGTGA 419 Query 6314 GGTTGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTA 6373 || ||||| || |||||||| || || | ||| || |||| | ||||| |||||| Sbjct 418 GGCTGATCTTGAGGAGCCATCCAAGCGCGGATACCCTCGTTCAGCAAAATGTTTTTGGTA 359 Query 6374 TAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAA 6433 ||||| || || || ||||| || || ||||| | | ||||| || || ||||| ||| Sbjct 358 TAGAATGTTTCAAATTCTGGGTCTTCTGCTGCCCGCAATTCTTGGGATACGAAGTCGTAA 299 Query 6434 GCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGG---TCCAAAGACCCATA 6490 || | ||||| | ||| | ||| | || || | || || | |||| | || | Sbjct 298 GCCCGGAGGTTCAATGCTAAACCCACGATTCCTA--CT-GACGCCATCCACAAGCCTGTG 242 Query 6491 ACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAG 6550 || || ||||||||||| ||||| |||| ||| || || ||| |||||||||||| || Sbjct 241 ACTGGTACAAACAGCATGAAGAAGTGTAACCACCGTTTGTTGGAGAAGGCGATACCGAAT 182 Query 6551 ATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTT--GTGTAG 6608 ||||| |||||||| || || || || ||||| || ||||| || ||| ||| |||||| Sbjct 181 ATCTGTGACCAGAATCGGTTCGCTGTCACCATGGAGTAGGTTTCTTCTGCTTGGGTGTAG 122 Query 6609 GCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAG 6668 | || || ||| || || ||| |||||| |||||||| || || || ||||| | Sbjct 121 --TTGAAGGCGCGGAAGGTTTTGGATGCTTCACCGTCTTCAAATAAGGTGTTTTCTACTG 64 Query 6669 TAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATAT 6728 | || |||||||| ||||| | | |||||||| | | ||| ||||| |||||||| | Sbjct 63 TGGCTCCGTGAATGGCACACAATAGCGCTCCACCGAGTACACCCGCTACTCCCATCATGT 4 Query 6729 G 6729 | Sbjct 3 G 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622055440861360