Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq8857 562 4e-155 seq7678 387 2e-102 seq7307 246 4e-60 seq7318 235 7e-57 >seq8857 Length=8770 Score = 562 bits (622), Expect = 4e-155 Identities = 724/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | |||||||| || | || ||||| Sbjct 6439 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGCCTTTACATTGGATGGTTT 6380 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| |||| || ||| | |||||||| Sbjct 6379 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATCATAGCCTTCAT 6321 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||||| || || || || ||||| || |||||||| || |||| || | | || Sbjct 6320 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTGCTTTA 6261 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 || ||||| || ||||| ||||| || ||||| |||| || || ||| | ||||| Sbjct 6260 CGGAAACAATATTATCTCCGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTT 6201 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 ||||| || |||||||| ||||| |||| || ||| | || || |||||||||| | Sbjct 6200 TTATCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 6141 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | | || | | ||||||||||||||||||||||| Sbjct 6140 GCTAATTGTTCTACACTTCTTACTAGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 6081 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 || || ||||||||||||| ||||| ||| || || ||||| ||||| || || | Sbjct 6080 GAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCGTATTCAGCTCCTGTTGCAG 6022 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || ||||||| ||| | | || || | |||||||| || ||||| | |||| Sbjct 6021 CTGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGC 5962 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | || ||||||||||| || ||||||| ||| |||| ||||| || || |||||||||| Sbjct 5961 CTCTAGGCATTTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAACACAACATCC 5902 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | |||||||| || |||||| | || ||||| ||||| || || || || || || | Sbjct 5901 TTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTATTTAGTG 5842 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| || ||| || | | ||||| || |||| ||| || Sbjct 5841 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTG 5782 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || | |||||||| || |||||||| ||||| || || || || || ||||| |||| Sbjct 5781 CTAATGAAGGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATG 5722 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||||||||| |||||| ||||||||||| ||||| | || | Sbjct 5721 GTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAACTCTCGTTCTTTACATT 5662 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||| | || || ||||| || | || || ||||| ||||| | || | || || | Sbjct 5661 TCTTCTTAGCTGCTTGGCCCGTTATCGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 5602 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| ||||| | || |||||||| ||||| || || | ||||| |||||||||||| Sbjct 5601 TGGCTTTCAATTTAAATGGTTTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTG 5542 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || || || || || | | ||||||||| || ||||||||||||||||| | Sbjct 5541 TAATTAATACCTGAGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATG 5482 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 | ||||||||||| |||||||| || ||||| || Sbjct 5481 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 5448 >seq7678 Length=557 Score = 387 bits (428), Expect = 2e-102 Identities = 342/427 (80%), Gaps = 0/427 (0%) Strand=Plus/Minus Query 180341 GCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAA 180400 ||||||||| ||||||| || || |||| ||||||||||| ||||| || || || || Sbjct 552 GCACGGTTCCTTGGTTACTTCCTCCTTGGTACGTGAAACCACAGAAACCGAATCACAAAA 493 Query 180401 CTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATA 180460 ||||||||||||||| || ||||||||||| |||||||||||||| |||||||| || || Sbjct 492 CTACGGTTACAAGTTCGGACAAGAAGAAGAAACCTACAACATCGTAGCTGCACACGGTTA 433 Query 180461 CTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTT 180520 ||| ||||| |||||||||| || || || ||||||||| ||||||||| |||||||| Sbjct 432 CTTTGGTCGGTTGATCTTCCAATACGCTTCCTTCAACAACAGCCGTTCACTGCACTTCTT 373 Query 180521 CCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGC 180580 | |||| |||||||| || | || |||||||| || || | || | ||||| ||||| Sbjct 372 CTTGGCTGCATGGCCAGTAATCGGTATCTGGTTTACCGCTTTAGGTATCAGCACAATGGC 313 Query 180581 ATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCT 180640 |||||||| ||||| |||||||||||||| || | || ||| ||||||||| || | Sbjct 312 GTTCAACCTGAACGGATTCAACTTCAACCAATCAGTAATCGATTCTCAAGGTCGCGTCAT 253 Query 180641 CAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCG 180700 | |||||||| |||||| ||||||||||| ||||||||||||| ||||||||||| Sbjct 252 CGCTACTTGGGCTGACGTAATCAACCGCGCTAACTTGGGTATGGAAGTCATGCACGAGCG 193 Query 180701 TAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGAGTCCACTCCTGTTGCACTCAC 180760 ||| |||||||||||||| | ||| |||| |||| ||| ||||||| || | || Sbjct 192 TAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGAAGTTGCTCCTGTGGCTTTAAC 133 Query 180761 CGCTCCT 180767 || ||| Sbjct 132 TGCACCT 126 >seq7307 Length=548 Score = 246 bits (272), Expect = 4e-60 Identities = 336/469 (72%), Gaps = 0/469 (0%) Strand=Plus/Plus Query 181968 TCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTG 182027 |||| |||||||| || || ||| | || ||||| || || | | ||| |||||||| | Sbjct 1 TCCACATGATGGGAGTAGCGGGTGTACTCGGTGGAGCGCTATTGTGTGCCATTCACGGAG 60 Query 182028 TGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCG 182087 || || || || || | | | |||||||||| | | || || ||| || ||| Sbjct 61 CCACAGTAGAAAACACCTTATTTGAAGACGGTGAAGCATCCAAAACCTTCCGCGCCTTCA 120 Query 182088 ATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGA 182147 | | || |||| |||||||||||| || ||||| ||||||||||| |||||||| |||| Sbjct 121 ACTACACCCAAGCAGAAGAAACCTACTCCATGGTGACAGCGAACCGATTCTGGTCACAGA 180 Query 182148 TCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTG 182207 | |||||||| || || ||| || ||||||| || ||||| ||||| ||||| || | Sbjct 181 TATTCGGTATCGCCTTCTCCAACAAACGGTGGTTACACTTCTTCATGCTGTTTGTACCAG 240 Query 182208 TTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTT 182267 | | || | |||| || | || || | ||| | || | ||||| || |||| Sbjct 241 TCACAGGCTTGTGGATGGCGTCAGTAGGAATCGTGGGTTTAGCATTGAACCTCCGGGCTT 300 Query 182268 ATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACA 182327 | ||||| |||||||||||| | | ||| ||||||||||||| || || || ||||| | Sbjct 301 ACGACTTCGTATCCCAAGAATTGCGGGCAGCAGAAGACCCAGAATTTGAAACATTCTATA 360 Query 182328 CAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCAC 182387 | || |||||| | |||| || ||| | || || ||| | || || ||||| || | Sbjct 361 CCAAAAACATTTTGCTGAACGAGGGTATCCGCGCTTGGATGGCTCCTCAAGATCAGCCTC 420 Query 182388 ATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | || | ||||| ||||| ||||| || |||| | |||||||| || Sbjct 421 ACGAACAATTTGTATTCCCAGAGGAGGTTCTACCTCGTGGTAACGCTCT 469 >seq7318 Length=447 Score = 235 bits (260), Expect = 7e-57 Identities = 256/340 (75%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 181805 AATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCT 181864 ||||| || || ||||| ||||| |||||||| || || ||||||||||| || ||||| Sbjct 1 AATGCAATCGCATTTTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTAATTTATCCA 60 Query 181865 CTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTC 181924 ||||| || | ||||||| |||||||| ||||| ||||| || || || || |||||| Sbjct 61 CTGGGTCAGGCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGCTTC 120 Query 181925 CTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTT 181984 | || || | || || |||||||||||||| | || || || ||||||||||| ||| Sbjct 121 ATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCATTTCATATGATGGGAGTT 180 Query 181985 GCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACT 182044 || ||| | |||| | ||| | || | || ||||| |||| ||| || || |||||| Sbjct 181 GCCGGTGTATTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCGACGGTAGAAAATACT 240 Query 182045 CTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAA 182104 | | | |||| ||||| |||||||| ||| || || | ||||||||| ||| Sbjct 241 TTATTTGAAGATGGTGATGGTGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAA 300 Query 182105 GAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTC 182144 ||||| ||||||||||| || || |||||||| ||||| Sbjct 301 GAAACTTATTCAATGGTCACTGCTAACCGCTTTCTGTCTC 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610328748386760