Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq8857 489 2e-133 seq7678 257 2e-63 seq5828 111 2e-19 >seq8857 Length=8770 Score = 489 bits (542), Expect = 2e-133 Identities = 690/969 (71%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | |||||| | || |||| ||||| ||||| ||||||||||| Sbjct 6421 TGGATAACCAGCACTGAAAACCGCCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 6362 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | |||||| | || ||||| || ||||| || || || Sbjct 6361 ACCTTATTGACCGCAACTTCTGTATTTATCATAGCCTTCATTGCTGCTCCTCCAGTAGAT 6302 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || || | || || ||||| || ||||| Sbjct 6301 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTGCTTTACGGAAACAATATTATCTCC 6242 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || |||||| | ||||| ||||| || |||||||| Sbjct 6241 GGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTATCCAATATGGGAAGCG 6182 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || |||||||||||| | || || | | |||||| Sbjct 6181 GCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTC 6122 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 6121 TTACTAGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 6062 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| || ||||| ||||| || |||| || ||||| ||||| Sbjct 6061 CGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 6002 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| || || || || ||||||||||| || || ||||| Sbjct 6001 ATTTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGCATTTCTGGTACT 5942 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| || || |||||||| |||||||||||||| || ||| Sbjct 5941 TTCAACTTTATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATG 5882 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | || || || | || || || ||||| ||||| | ||| Sbjct 5881 TTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 5822 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || ||||||||| Sbjct 5821 ACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCTAATGAAGGTTACAAATTC 5762 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || ||||| || || ||||| || ||||| || | ||| Sbjct 5761 GGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 5702 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 ||||||||||| || || ||||| |||| | | || |||||| | ||| | | || Sbjct 5701 TTCCAATATGCAAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCC 5642 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 || | | || ||||| ||| | | |||||| | || ||||| || || | ||||| Sbjct 5641 GTTATCGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAATTTAAATGGT 5582 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || ||||| || || | || ||| | ||| ||| || ||| || || || Sbjct 5581 TTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGAGCTGAT 5522 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | ||||| | || ||||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 5521 ATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 5462 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 5461 CCTCTAGAC 5453 >seq7678 Length=557 Score = 257 bits (284), Expect = 2e-63 Identities = 299/402 (74%), Gaps = 6/402 (1%) Strand=Plus/Minus Query 170283 GCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAA 170342 ||||||||| | || || || || | | | || || ||||| | ||| ||||| || Sbjct 552 GCACGGTTCCTTGGTTACTTCCTCCTTGGTACGTGAAACCACAGAAACCGAATCACAAAA 493 Query 170343 CTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATA 170402 ||| || ||||| |||||||||||||||||||| |||||||| || || ||||| || || Sbjct 492 CTACGGTTACAAGTTCGGACAAGAAGAAGAAACCTACAACATCGTAGCTGCACACGGTTA 433 Query 170403 CTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTT 170462 ||||||| | | ||||||||||| ||| ||| ||||| || ||| || |||||||| Sbjct 432 CTTTGGTCGGTTGATCTTCCAATACGCTTCCTTCAACAACAGCCGTTCACTGCACTTCTT 373 Query 170463 CCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGC 170522 | | ||| ||| || ||| | | |||||||| || | | ||||| |||||||||| Sbjct 372 CTTGGCTGCATGGCCAGTAATCGGTATCTGGTTTACCGCTTTAGGTATCAGCACAATGGC 313 Query 170523 ATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGT 170579 || ||||| || ||||| ||||||||||| ||| | | ||| ||| ||| || Sbjct 312 GTTCAACCTGAACGGATTCAACTTCAACCAATCAGTAATCGAT---TCTCAAGGTCGCGT 256 Query 170580 AGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGA 170639 | |||| ||||| ||||| | ||| | || ||| | ||||||||||| ||||| || Sbjct 255 CATCGCTACTTGGGCTGACGTAATCAACCGCGCTAACTTGGGTATGGAAGTCATGCACGA 196 Query 170640 GCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 |||||| || ||||||||||| | |||||||| ||| ||| Sbjct 195 GCGTAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGA 154 >seq5828 Length=68329 Score = 111 bits (122), Expect = 2e-19 Identities = 178/251 (71%), Gaps = 15/251 (6%) Strand=Plus/Plus Query 150979 CCAGAAATTCTTGATGGAAGAGTAAAGACTTTACATCCAAAGATTCATGGTGGTATTCTT 151038 |||||||| | | || ||||| || ||||||||||| ||||||||||||| ||| Sbjct 64197 CCAGAAATGTTGGGAGGTAGAGTGAAAACTTTACATCCTGCCGTTCATGGTGGTATCCTT 64256 Query 151039 GCACAACGAGGTAATTC--TAGTCATGATTTAGATCTTAAGGTAAATCGTATTGAAC--- 151093 || ||| | || ||| |||| ||| | |||| | | | |||||| Sbjct 64257 GCT-----AGGGACATCGATAGCGATGAGAAAGACTTGAAGGAACAGCACATTGAAAAAG 64311 Query 151094 -CGATTGATATTGTTGCTGTAAACCTATATCCATTTAAAGAAACTGTTGCTAAACCAGGT 151152 ||||| || | ||| ||||| |||||| ||||| ||||||||||||||||| ||| Sbjct 64312 TCGATT-ATGTCGTT--TGTAA-CCTATACCCATTCAAAGAAACTGTTGCTAAGGTGGGT 64367 Query 151153 GTAACTCTTGCAGAAGCAATTGAGAATATTGACATTGGTGGTCCTAGTATGGTAAGATCA 151212 |||||| || ||||||| | || | ||||| ||||||||| || | | ||||| || Sbjct 64368 GTAACTATTCCAGAAGCCGTAGAAGAAATTGATATTGGTGGTGTTACTCTATTAAGAGCA 64427 Query 151213 GCAGCAAAGAA 151223 || || ||||| Sbjct 64428 GCTGCTAAGAA 64438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582783019733600