Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq8857 587 8e-163 seq7678 300 2e-76 >seq8857 Length=8770 Score = 587 bits (650), Expect = 8e-163 Identities = 722/985 (73%), Gaps = 6/985 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || ||| | || | || ||||| ||||| |||||| Sbjct 6427 TGTAACTGGATAACCAGCACTGAAAACCGCCTTTACATTGGATGGTTTGGTGTTTTGATG 6368 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || ||||| || |||||||| || |||||| Sbjct 6367 ATCCCTACCTTATTGACCGCAACTTCTGTATTTATCATAGCCTTCATTGCTGCTCCTCCA 6308 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || | || || || ||||| || Sbjct 6307 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTGCTTTACGGAAACAATATT 6248 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 ||||| ||||| | |||||| ||| ||||| ||| | ||||| ||||| || ||| Sbjct 6247 ATCTCCGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTATCCAATATGG 6188 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| || ||||||| ||||| || |||||||| |||| | || | || | Sbjct 6187 GAAGCGGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 6128 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| |||||||||| || ||| | Sbjct 6127 CACTTCTTACTAGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 6068 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| |||||| || || || || || | || || ||||| Sbjct 6067 GGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 6008 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| | || || | |||||||| || ||||| | |||||||| || |||||| Sbjct 6007 TTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGCATTTCT 5948 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| ||| | || ||||| || || ||||||||||| |||||||| || Sbjct 5947 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTT 5888 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || |||||||| ||||| || || |||||||||||||| ||||| Sbjct 5887 CACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTATTTAGTGCTATGCATGGTTCC 5828 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | | ||||| |||||||| || | || || || | ||||| Sbjct 5827 TTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCTAATGAAGGTTAC 5768 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 || ||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| || Sbjct 5767 AAATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 5708 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| |||||| |||||||||||| ||||| | || |||||| | ||||| Sbjct 5707 TTGATCTTCCAATATGCAAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCT 5648 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | || || || | || ||||| ||||| | ||| | |||||||| ||||| | Sbjct 5647 TGGCCCGTTATCGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAATTTA 5588 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 || |||||||| ||||| ||||| || ||||| |||| || || ||| ||| Sbjct 5587 AATGGTTTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACC 5531 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 || || |||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 5530 TGAGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 5471 Query 163459 CACAACTTCCCACTTGACCTTGCTG 163483 || |||||||| || ||||| |||| Sbjct 5470 CATAACTTCCCTCTAGACCTAGCTG 5446 >seq7678 Length=557 Score = 300 bits (332), Expect = 2e-76 Identities = 328/433 (76%), Gaps = 2/433 (0%) Strand=Plus/Minus Query 163092 GCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAA 163151 ||||||||| | |||||||| || | | | ||||| || || || ||||| || Sbjct 552 GCACGGTTCCTTGGTTACTTCCTCCTTGGTACGTGAAACCACAGAAACCGAATCACAAAA 493 Query 163152 CTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATA 163211 ||||||||| |||||||||||||||||||| || |||||||| || ||||| || || || Sbjct 492 CTACGGTTACAAGTTCGGACAAGAAGAAGAAACCTACAACATCGTAGCTGCACACGGTTA 433 Query 163212 CTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTT 163271 ||||||||| ||||||||||| || || || ||||||||| |||||||| |||||||| Sbjct 432 CTTTGGTCGGTTGATCTTCCAATACGCTTCCTTCAACAACAGCCGTTCACTGCACTTCTT 373 Query 163272 CCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGC 163331 | | ||||||| || || || | |||||||| || || | ||| | || ||||| Sbjct 372 CTTGGCTGCATGGCCAGTAATCGGTATCTGGTTTACCGCTTTAGGTATCAGCACAATGGC 313 Query 163332 ATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGAT 163391 |||||||| ||||| ||||||||||||||||| || | || | ||| || || Sbjct 312 GTTCAACCTGAACGGATTCAACTTCAACCAATCAGTAATCGATTCTCAAGGTCGCGTCAT 253 Query 163392 TCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGC 163450 |||||||||| || | | ||| | || |||| ||||||||||| |||||||||| Sbjct 252 CGCTACTTGGGCTGACGTAATCAACCGCGC-TAACTTGGGTATGGAAGTCATGCACGAGC 194 Query 163451 GTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAGACATCTCAGGTTGCTCTAA 163510 |||| |||||||||||||| | ||| | ||||||| ||| ||| || ||| ||| Sbjct 193 GTAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGAAGTTGCTCCTGTGGCTTTAA 134 Query 163511 CTGCACCTTCAAT 163523 |||||||| |||| Sbjct 133 CTGCACCTGCAAT 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553023137958360