Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3379 120 6e-22 seq2421 86.0 1e-11 >seq3379 Length=20444 Score = 120 bits (132), Expect = 6e-22 Identities = 291/432 (67%), Gaps = 8/432 (2%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || ||||| || ||||| || ||||| || ||||| || || ||||| ||| ||| Sbjct 1128 GCCTTCTTCGCCGCCTCCGACGGTATTGTCAACGAAAACTTGGTCGAGAATTTCTCCACC 1069 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTG 25722 || || ||| | ||| |||||| |||||||||||||||| || || |||||||| | Sbjct 1068 GAGGTCCAGATCCCGGAAGCCAAGAGTTTCTACGGTTTCCAAATCGCTATCGAAAACATT 1009 Query 25723 CACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGCCGAGAGAGA 25781 || || || || || | | | ||| || ||||| | || || || || Sbjct 1008 CATTCCGAAACCTACTCCTTGTTGATCGAT-ACCTACATCAAGGATCCAAAGGAAAGTGA 950 Query 25782 TCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG-GAAGGCGCGGTGGGCCA 25840 |||| |||||||| ||| ||||| | | | |||||| |||||| Sbjct 949 ATTCTTGTTCAACGCCATCGACACCAT-CCCAGAAATTTGCGAGAAGGCCGAATGGGCCC 891 Query 25841 TGAAGTGGATC-AACAGCCAGA-GCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGC 25898 | | |||||| || | |||| ||||| ||| || || | || || ||||| || | Sbjct 890 TTAGATGGATCCAAGACGCAGACGCGCT--GTTCGGTGAAAGACTAGTCGCCTTCGCGTC 833 Query 25899 TGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGG 25958 | || || | || ||| ||| || || || ||||||||||| | ||| ||| || Sbjct 832 CATCGAAGGTGTTTTCTTCTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAGAGAGG 773 Query 25959 GACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAG 26018 | ||||||||| || ||| ||||||||| | ||| |||| ||||| ||| | |||| Sbjct 772 TATGATGCCCGGGTTGACCTTCTCCAACGAGTTGATCTGCAGAGACGAAGGTTTGCACAC 713 Query 26019 AGATTTTGCCTG 26030 || |||||||| Sbjct 712 CGACTTTGCCTG 701 >seq2421 Length=19268 Score = 86.0 bits (94), Expect = 1e-11 Identities = 345/532 (65%), Gaps = 15/532 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 ||||||||| ||||| |||||| || | ||||| || | | |||| || | || Sbjct 4484 CTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATCCATGACTGGAACAACAGAATGAA 4425 Query 25572 AGA---CGAGCAGCATTTTC---TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGG 25625 || |||| || ||||| || || || | || || || || || ||||| || Sbjct 4424 CGAGAACGAG-AGATTTTTCATTTCCAGA--GTTCTTGCCTTTTTCGCCGCTTCTGACGG 4368 Query 25626 TATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAA 25685 ||| || || || || || || | ||| ||| ||||| || ||||| || Sbjct 4367 TATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTCCAAATTCCAGAGGCAAA 4308 Query 25686 GTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCT 25745 | |||||||||||||||| || || |||||| | |||||||| || || | | Sbjct 4307 GAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCACTCTGAAACTTACTCCTTGTT 4248 Query 25746 TCT-GATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGC 25804 | ||| || ||||| | ||| || || || |||| |||||| | Sbjct 4247 GATCGAT-ACCTACATCAAGGACCCTAAAGAAAGTGAATTCTTGTTCAATGCCATTCACA 4189 Query 25805 ACATACCCAGCATCAAGAG-GAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAG 25862 ||| ||||| | | | |||||| ||||| | | ||||| ||| | | || Sbjct 4188 CCAT-CCCAGAAATCGGTGAGAAGGCCGAATGGGCTTTAAGATGGATTCAAGACGCTGA- 4131 Query 25863 CGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG 25922 ||| |||||| || | || || |||||||| | | || || |||||||| ||| Sbjct 4130 CGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGG 4071 Query 25923 TTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC 25982 ||| ||||| |||| |||||| | || ||| || | |||||||| | |||||| Sbjct 4070 TTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTC 4011 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||||| | ||| | || ||||| ||| | |||| || ||||| ||| || Sbjct 4010 CAACGAATTGATCTGTAGAGACGAAGGTTTGCACACCGACTTTGCATGCTTG 3959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928741245415360