Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq8857 553 5e-153 seq7678 221 4e-53 >seq8857 Length=8770 Score = 553 bits (612), Expect = 5e-153 Identities = 720/989 (73%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 5447 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 5506 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | ||||| || ||| | || | ||| | | | ||||| Sbjct 5507 AGCGCGGTTAATGATATCAGCTCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 5564 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||| ||||| ||||| ||||| | ||| ||||||||||| || || | || || Sbjct 5565 -GATTGATTGAAATTGAAACCATTTAAATTGAAAGCCATAGTACTAATACCTAAAGCAGT 5623 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | | |||||||||||||| ||||||||||||| | | ||||| Sbjct 5624 AAACCAAATACCGATAACGGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTT 5683 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || || ||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 5684 GAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATA 5743 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||||| || || | || ||| ||| || || ||||| Sbjct 5744 AGTTTCTTCCTCTTGACCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGTAGTTTC 5803 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | || ||||||||| |||| | ||||| || Sbjct 5804 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCACCAAA 5863 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || || ||||||||||| |||||||| || ||||| Sbjct 5864 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAA 5923 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || ||||||||||| ||| || ||||||||||||||||| || || || Sbjct 5924 TACAATCATAAAGTTGAAAGTACCAGAAATGCCTAGAGGCATACCATCAGAAAAGCTTCC 5983 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| || |||| | ||||| || | || | |||||||| || || || ||||| Sbjct 5984 TTGACCAATTGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAC 6041 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| ||||||||||| || | |||| |||||||| | || |||||| Sbjct 6042 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATG 6101 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | ||||| | ||||| || | ||| || || || || ||| Sbjct 6102 TAACAAGCTACACCTAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 6161 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | | ||| |||||||| ||||| || ||||| | |||||| || | Sbjct 6162 AACCATTCATCAACAGATGCCGCTTCCCATATTGGATAAAAGTGCAAACCGATAGCCGCA 6221 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || || || || || |||||||| || || || | ||| || ||| Sbjct 6222 GAAGTAGGAATAATGGCACCGGAGATAATATTGTTTCCGTAAAGCAAAGATCCAGAAACA 6281 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || ||||||||||||| || || || | |||| | Sbjct 6282 GGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATGATAAATACA 6341 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| |||||| Sbjct 6342 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGGCGG 6401 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||||| ||| || Sbjct 6402 TTTTCAGTGCTGGTTATCCAGTTACAGAA 6430 >seq7678 Length=557 Score = 221 bits (244), Expect = 4e-53 Identities = 278/379 (73%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||| || |||| |||||||| ||||| |||||||||||||| ||||| | || | ||| Sbjct 162 AGCCAAGTCTAAGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAAGTT 221 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||||| |||||||||||| |||| | ||| | ||| || | | | || Sbjct 222 AGCGCGGTTGATTACGTCAGCCCAAGTAGCGATGACGCGACCTTGAGAATCGATTACTGA 281 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 |||||||||||||||||| || || || || ||||| ||| ||| || | || ||||| Sbjct 282 TTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATTGTGCTGATACCTAAAGCGGTAAA 341 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | | || ||||| |||||||||||||| || || | ||| ||||| || Sbjct 342 CCAGATACCGATTACTGGCCATGCAGCCAAGAAGAAGTGCAGTGAACGGCTGTTGTTGAA 401 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 | ||| || |||||||| | | |||||||| || || || || || || || || || Sbjct 402 GGAAGCGTATTGGAAGATCAACCGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAGGT 461 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC- 18192 ||||||||||| || || || || || ||||| || || || || || ||||| | Sbjct 462 TTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTTTGTGATTCGGTTTCTGTGGTTTCACG 521 Query 18193 TAATAAGTGAGGAAGTAAC 18211 || ||| ||||||||||| Sbjct 522 TACCAAG-GAGGAAGTAAC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151302373395386