Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq8857 522 3e-143 seq7678 329 4e-85 seq7307 226 4e-54 seq7318 206 3e-48 >seq8857 Length=8770 Score = 522 bits (578), Expect = 3e-143 Identities = 689/960 (72%), Gaps = 4/960 (0%) Strand=Plus/Plus Query 103173 CAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGAC 103232 |||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 5446 CAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGT 5505 Query 103233 CAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGG 103292 ||||||||| | | || || ||||| || | |||||||| |||| ||||| | | Sbjct 5506 TAGCGCGGTTAATGATATCAGCTCAGGTATTAATTACACGACCTTGACTATCAACTACAG 5565 Query 103293 ACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGA 103352 | || ||||| ||||| || || | ||||| ||||| || |||| ||| | || || | Sbjct 5566 ATTGATTGAAATTGAAACCATTTAAATTGAAAGCCATAGTACTAATACCTAAAGCAGTAA 5625 Query 103353 ACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGA 103412 |||| ||||| | || || | |||||||||| Sbjct 5626 ACCAAATACCGATAACGGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGA 5685 Query 103413 ATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATG 103472 | ||| |||||||||||||| || || || ||||||||||| ||||| || || || | Sbjct 5686 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAG 5745 Query 103473 TCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC 103532 | ||||||||||| ||||| |||||||| | || ||||||| |||| || || || | Sbjct 5746 TTTCTTCCTCTTGACCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGTAGTTTCCC 5805 Query 103533 -GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAG 103591 || | | | || | || |||| ||||| ||||||||||| || || || ||||| || Sbjct 5806 TGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGGAGCCACCAAAT 5864 Query 103592 ACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAG 103651 || ||||| || || | |||||| || |||||||| || ||||| ||||| || ||||| Sbjct 5865 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAAT 5924 Query 103652 ACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCT 103711 || | ||| ||||||| || || ||||| || | ||||||| |||| || || ||| Sbjct 5925 ACAATCATAAAGTTGAAAGTACCAGAAATGCCTAGAGGCATACCATCAGAAAAGCTTCCT 5984 Query 103712 TGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCG 103771 ||||||| ||||| | |||||| || || | ||||| ||||||||||| || || || Sbjct 5985 TGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATACGCA 6044 Query 103772 ACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATAT 103831 ||| ||||| |||||||| ||||||||| | || |||||||||||| ||||| || Sbjct 6045 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATGTAA 6104 Query 103832 GCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGC 103891 | | || | | |||||| | || | || | |||||||||| || || | | Sbjct 6105 CAAGCTACACCTAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAAC 6164 Query 103892 CACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAG 103951 || ||||||| |||||| |||||||| || ||||| ||||| | ||| || || || Sbjct 6165 CATTCATCAACAGATGCCGCTTCCCATATTGGATAAAAGTGCAAACCGATAGCCGCAGAA 6224 Query 103952 GAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGT 104011 | |||| || ||||| ||||| || ||||| ||||| | | || |||| || ||| Sbjct 6225 GTAGGAATAATGGCACCGGAGATAATATTGTTTCCGTAAAGCAAAGATCCAGAAACAGGT 6284 Query 104012 TCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGAT 104070 |||||||| || || ||||| || ||||| || || | ||| || | ||| || |||| Sbjct 6285 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATGATAAATACAGA- 6343 Query 104071 GGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130 ||||| | ||| | || |||||||||| ||||| ||||| |||| || || ||||| Sbjct 6344 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGGCGGTT 6403 >seq7678 Length=557 Score = 329 bits (364), Expect = 4e-85 Identities = 304/395 (77%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 CAGCAGCCAAGTCTAAGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 217 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 ||||||||||| ||||| ||||| || | || ||||| ||| ||| | | Sbjct 218 AGTTAGCGCGGTTGATTACGTCAGCCCAAGTAGCGATGACGCGACCTTGAGAATCGATTA 277 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || ||||||||||||||||||||||||||||||||||| ||||| | ||| | |||| Sbjct 278 CTGATTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATTGTGCTGATACCTAAAGCGG 337 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 | ||||||||||| | |||||| || ||||| Sbjct 338 TAAACCAGATACCGATTACTGGCCATGCAGCCAAGAAGAAGTGCAGTGAACGGCTGTTGT 397 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || ||||||||||||||||| ||||| |||||||| || || ||||||||||||| Sbjct 398 TGAAGGAAGCGTATTGGAAGATCAACCGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 457 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||| |||||||||||||||||||| |||||||| ||||| ||||| || || | Sbjct 458 AGGTTTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTTTGTGATTCGGTTTCTGTGGTTT 517 Query 103530 CACGAACCAGCGAGGACGTAACAAGCGAACCGTGC 103564 |||| |||| ||||| ||||| | ||||||||| Sbjct 518 CACGTACCAAGGAGGAAGTAACCAAGGAACCGTGC 552 >seq7307 Length=548 Score = 226 bits (250), Expect = 4e-54 Identities = 337/478 (71%), Gaps = 0/478 (0%) Strand=Plus/Minus Query 101701 GTATATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGC 101760 || ||| | |||||||| || | || | ||||| || || |||||||| | ||| || Sbjct 478 GTCTATTAGAGAGCGTTACCACGAGGTAGAACCTCCTCTGGGAATACAAATTGTTCGTGA 419 Query 101761 GGTTGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTG 101820 || ||||| || |||| ||| || || | ||| || |||| | ||||| || || Sbjct 418 GGCTGATCTTGAGGAGCCATCCAAGCGCGGATACCCTCGTTCAGCAAAATGTTTTTGGTA 359 Query 101821 TAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAA 101880 ||||| || || || ||||| ||||||||||| | | ||||||||||| ||||| ||| Sbjct 358 TAGAATGTTTCAAATTCTGGGTCTTCTGCTGCCCGCAATTCTTGGGATACGAAGTCGTAA 299 Query 101881 GCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACA 101940 || || ||||| | || | ||| | || || | || |||||| || | || Sbjct 298 GCCCGGAGGTTCAATGCTAAACCCACGATTCCTACTGACGCCATCCACAAGCCTGTGACT 239 Query 101941 GGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATT 102000 || ||||| ||||| ||||| || ||||||| || || || || ||||| || || Sbjct 238 GGTACAAACAGCATGAAGAAGTGTAACCACCGTTTGTTGGAGAAGGCGATACCGAATATC 179 Query 102001 TGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCG 102060 || |||||||| ||||| ||||| ||||| || || || ||||| |||| ||| | | | Sbjct 178 TGTGACCAGAATCGGTTCGCTGTCACCATGGAGTAGGTTTCTTCTGCTTGGGTGTAGTTG 119 Query 102061 AATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACA 102120 || || ||| || || | | ||||| |||||| | | ||||| || || ||| | Sbjct 118 AAGGCGCGGAAGGTTTTGGATGCTTCACCGTCTTCAAATAAGGTGTTTTCTACTGTGGCT 59 Query 102121 CCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGA 102178 ||||| || || ||| || ||||| || || | ||| || || |||||||| |||| Sbjct 58 CCGTGAATGGCACACAATAGCGCTCCACCGAGTACACCCGCTACTCCCATCATGTGGA 1 >seq7318 Length=447 Score = 206 bits (228), Expect = 3e-48 Identities = 252/341 (74%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 102002 GAGACCAGAAA-CGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCG 102060 ||||| ||||| ||||| || || |||||||||||||| ||||| |||| || | | Sbjct 340 GAGAC-AGAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 282 Query 102061 AATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACA 102120 || || ||| || ||||| ||||||||||||| | | ||| || || || || || Sbjct 281 AAAGCCCGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACCGTCGCA 222 Query 102121 CCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAAT 102180 || || || || | ||||| || | |||| | ||| ||||| ||||||||||| ||| Sbjct 221 CCATGAATAGCGCATAGCAGGGCGGCGCCCAATACACCGGCAACTCCCATCATATGAAAT 162 Query 102181 GGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCA 102240 ||||| | ||||| ||||| || || || | || || | ||| | |||||| ||||| Sbjct 161 GGGTTCAAGGTCCAATTATGAAACCCTTGAAAAAATAGGATGAAGCGAAATATAGCTGCT 102 Query 102241 ACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACA 102300 |||||||| |||||||| ||||||| | ||| || || ||||| || ||||| ||| Sbjct 101 ACACCAAAACTAGGCGCAAAAAACCAACCAGCCTGACCCAGTGGATAAATTAGAAATACA 42 Query 102301 CTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATT 102341 ||||||||||| || || ||||| || || || ||||| Sbjct 41 GAAACAAAAACAGCAATTGGACCAGAAAATGCGATTGCATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633442971152520