Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq3651 437 2e-118 >seq3651 Length=7586 Score = 437 bits (484), Expect = 2e-118 Identities = 874/1274 (69%), Gaps = 51/1274 (4%) Strand=Plus/Plus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 || |||||||||| || ||||||||| | ||||| | | |||| | || ||| Sbjct 3659 TGTAGTGGTCAACTAATACTGGCCACAGCATTAGACTGTAAGTAGTACAGCCGCTCAGAT 3718 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220 ||||| || | | | |||||||| ||| || || | || |||||||||||| Sbjct 3719 TCGTTGGGCGTCAGACTGCCGTTATACCAGTGGGGCCTGATAGCGCTGTAATATCCCGTT 3778 Query 39221 ATATAGTCCGTTATGGCG---TGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGC 39277 |||||| |||| ||| || ||| ||||||||||| || ||| | |||| Sbjct 3779 ATATAGCGGATTATCGCGCCCTGGGCT---TCGCTGAAGCTGTTATAGCCCTTCGTCGGC 3835 Query 39278 ATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTT 39337 | ||||||| ||||||| |||| |||||| || ||||| ||| |||||||||||||||| Sbjct 3836 ACCCATTCGGTCTTCAGGCTCCGGAAGAACCGCTCCATAGGGGCGTTATCCCAGCAGTTT 3895 Query 39338 CCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCT 39397 || || || ||||||||||| | ||| | ||||||| ||||| | || | Sbjct 3896 CCCCGTCGACTCATACTCTGCTTTATCCTACAGCGCCACAGCGCCTGCCGATATCTACG- 3954 Query 39398 GCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGT 39457 ||| ||||| | |||||||| |||||||||||| ||| | |||||||| || Sbjct 3955 GCTGGTATAGGGGCTGCCCTGGTCGCTGTGGAACGCCACGTCTGTTGGCTTACCCCGAAG 4014 Query 39458 TTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGC--TGTCCGGCGAGAACGACATG 39515 ||||| ||||| | || |||||| | || || ||| |||||| || ||||||| Sbjct 4015 CTCCCAGGCCATCTGCAACGCTTTGACCGTCAG--TGCCGAGTCCGGTGACGTCGACATG 4072 Query 39516 GCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGC 39575 ||||||||||| ||||| | ||| |||| ||| || || || || || || ||||||| Sbjct 4073 GCCCAGCCCACCGGTTTACGTGCAAACAAGTCCAGCACCACCGCCAGATAAGCCCAGCAT 4132 Query 39576 TTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCG 39635 ||||||||||||||||| |||||||| |||||||| ||||| | ||| |||| || ||| Sbjct 4133 TTACCCGTCCAGATATAAGTCACATCGCCGCACCAGACCTGGTCCGGCCCGGTAACCGCG 4192 Query 39636 AACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGG 39695 ||||| | || || | ||| || || |||| ||||| | || || ||||| || | Sbjct 4193 AACTGGCGGTCGAGATGGTTCGGTATCTCAACGTGTTCGTTTCCGCCGCGTTTGTATTTG 4252 Query 39696 TGAGTCGGCT-GCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCA 39754 || | | ||| ||| || ||| | | |||||||||||| ||| | || ||||| Sbjct 4253 TGCG-CTGCTATCTGGCAACTGGCGATATTCAGCTCTTTCATCAGCTTACC----AGCCA 4307 Query 39755 GCGTCCCATCTGGTAGCC--TCTCCGGGTTG-CCATTGTGGCGATGCTTCTTGCTCCGGC 39811 ||| ||||| | | ||| ||| | || | || | ||||| |||| || ||||| Sbjct 4308 GCGGCCCATTTTGACGCCAGAGTCCCTGCTGACGATGGCAGCGATACTTCGGGCGCCGGC 4367 Query 39812 CGAACCGTGGCTG--ATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTG 39869 || ||| |||| | ||| | ||| | |||| || || || | ||| | Sbjct 4368 AGAGCCGCCGCTGGCGTTCCAGG--CCTCCATGACCTTGCTACGCTTGACCACACGTTCG 4425 Query 39870 CCGTCTGGTT--TT---TCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCC 39924 ||||| || | || | | | ||| ||||| ||||||||||||||||| || Sbjct 4426 CCGTCAGGCTCATTCGCTGAAGCCGG-----CCAGTGCCTGTAGCTGCTGCGATGGACGT 4480 Query 39925 CGAACACATGGCAGAGTGTGACCATAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGA 39984 | || ||||| | | | | ||||| |||||| || | ||| || || || Sbjct 4481 CAAAAGTCTGGCACAACGCAGCGACCGGATACCTCGCTCTTAGCCTGTCGACTACCGTGA 4540 Query 39985 ACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCAT 40044 || ||| || | ||| ||||| |||||||| ||||||||||||| ||||| |||||||| Sbjct 4541 ACCGTTGAGTGCGTCCGACATTAAGAGCGCCGTAGCCTTTTTTAGGATTTCGTTCTCCAT 4600 Query 40045 TTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGG 40104 ||||| |||||||| || ||||| |||||| | || | ||||| || || | | Sbjct 4601 TTCAAGGCGTTGTATTTTCTTCCTCGCCTCACGCAGCTCGAGCTGTTCTGGCGTCA--GA 4658 Query 40105 GGAGG--CTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTC 40162 ||||| | || ||||| ||||| |||||| ||||| | || ||||| | | Sbjct 4659 GGAGGCCCGGCGGGCGTTTTCCCCTGGCGCTCAAGTCGCAGCTTATTCACCCAACGGGGG 4718 Query 40163 ATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGT--GTATTTC--TG 40218 || | ||| ||| || | | || | ||||| | | ||| |||| | || Sbjct 4719 ATAGCCGAATGGCTTACGTTAACTGCCTCTGCGGCCT----TAACGTAGGTATAGCCGTG 4774 Query 40219 GTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCAT 40278 ||| ||||| | | || | ||| | ||||| || | | ||| ||| ||| Sbjct 4775 GTCGACAACTAACTTCGCCGCTTCAAGCTTAAATTCCGGCGTGGAAT---GTTTAGCCAT 4831 Query 40279 TGGAGCACCTGTGTTGTTCTG-AGGTGAGCATATCACC-TCTGTTCAGGTGGCCAAATTC 40336 ||| |||||||| |||| | ||||||| |||||||| || | ||||||| ||| || Sbjct 4832 TGGGTCACCTGTGGTGTTGGGAAGGTGAGAATATCACCTTCCGATCAGGTGACCAGTATC 4891 Query 40337 AGTGTGCCACTTCA 40350 ||||| ||||| || Sbjct 4892 AGTGTACCACTACA 4905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132584356089086