Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2811 136 6e-27 seq3668 107 3e-18 seq4845 98.7 2e-15 seq3706 91.5 2e-13 >seq2811 Length=58406 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||||| || || || || | || || ||| | || Sbjct 27422 TGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCG 27363 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || |||| |||||| ||| || ||||| ||||| || ||||||| Sbjct 27362 ACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAAC 27303 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| ||||| ||| | || || ||||||| | | ||||| || | Sbjct 27302 AAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTACAACA 27243 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| | || || || || |||| ||||| |||| Sbjct 27242 TTCAGAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTA 27195 Score = 116 bits (128), Expect = 6e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||||| || || || || | || || ||| | || Sbjct 27194 TGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCG 27135 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || ||||| ||| || ||||| ||||| || ||||||| Sbjct 27134 ACACTATTGACAACGTCAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAAC 27075 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| ||||| ||| | || || ||||||| | | |||||||| | Sbjct 27074 AAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAACA 27015 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | || || || || ||| | || | || || |||| || || ||||| Sbjct 27014 TTCAGAAGGAGTCTACTCTTCACCTTGTGTTGAGATTGAGGGGTGGTAA 26966 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || ||||| || || | || || ||| | || Sbjct 27650 TGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTAGAGGTTGAATCTTCCG 27591 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || ||||| ||| || ||||| || || || ||||||| Sbjct 27590 ACACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAAC 27531 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| ||||| || |||| || |||||| || | || || || | Sbjct 27530 AAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAACA 27471 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| | || || || || |||| ||||| |||| Sbjct 27470 TCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTA 27423 >seq3668 Length=38538 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 || || || || || || || || ||| | || || ||| | || |||||| | ||| Sbjct 8099 AAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAAT 8040 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 || || || || ||| || ||||| || ||||| || ||||||||| | || ||| Sbjct 8039 GTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 7980 Query 146166 GCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCG 146225 || ||||| ||||| || || |||||| || | || || || || ||||||||||| Sbjct 7979 GCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAATCC 7920 Query 146226 ACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||| | || ||||| || |||| ||||| |||| Sbjct 7919 ACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTA 7886 >seq4845 Length=48244 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| ||||| || || ||||||||||| |||||||| ||||| ||| | || ||| Sbjct 16191 AAGGAAGGTATTCCTCCAGACCAACAAAGACTGATTTTTGCTGGTAAGCAACTGGAGGAT 16132 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| || |||| ||||| || ||||| || || ||| | || || || || || Sbjct 16131 GGTAGAACTTTGTCAGACTATAACATCCAAAAGGAGTCTACTCTTCACTTGGTCTTGAGA 16072 Query 146247 TTAAGAGGAGGTAAATAAA 146265 | ||||| || || |||| Sbjct 16071 CTGAGAGGTGGCAATTAAA 16053 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| ||||| || || ||||||||||| |||||||| ||||| ||| | || ||| Sbjct 16419 AAGGAAGGTATTCCTCCAGACCAACAAAGACTGATTTTTGCTGGTAAGCAACTGGAGGAT 16360 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| || |||| ||||| || ||||| || || ||| | || || || || || Sbjct 16359 GGTAGAACTTTGTCAGACTATAACATCCAAAAGGAGTCTACTCTTCACTTGGTCTTGAGA 16300 Query 146247 TTAAGAGGAGGTA 146259 | ||||| |||| Sbjct 16299 CTGAGAGGTGGTA 16287 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| ||||| || || ||||||||||| |||||||| ||||| ||| | || ||| Sbjct 16647 AAGGAAGGTATTCCTCCAGACCAACAAAGACTGATTTTTGCTGGTAAGCAACTGGAGGAT 16588 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| || |||| ||||| || ||||| || || ||| | || || || || || Sbjct 16587 GGTAGAACTTTGTCAGACTATAACATCCAAAAGGAGTCTACTCTTCACTTGGTCTTGAGA 16528 Query 146247 TTAAGAGGAGGTA 146259 | ||||| |||| Sbjct 16527 CTGAGAGGTGGTA 16515 >seq3706 Length=333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 ||||| ||| || ||||| || || || |||||||||||| | || ||||| ||||| Sbjct 286 AAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAG 227 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 || ||||| || |||||| || | || || || || ||||| ||||| ||| | || Sbjct 226 CAGTTAGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCAC 167 Query 146235 TTAGTATTACGATTAAGAGGAGGTA 146259 || || || |||| ||||| |||| Sbjct 166 TTGGTGTTGAGATTGAGAGGTGGTA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786078752273480