Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3690 104 3e-17 seq2922 86.0 7e-12 >seq3690 Length=234713 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||||| |||||| ||||| || ||||| |||||||||||||| ||||| | ||||||| Sbjct 182528 GTGTTCTCAAATAATACATACCGGTCTTTAGACCCTTCTTCCAGCCGTAGAAATGCATAC 182587 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | | ||||| ||| | | ||| || ||| | || | || || || ||||||| Sbjct 182588 TTGTTAGCTTACCCATAGTTGGGGCACGCAAGAATAAATTCAAAGAGTGAGATTGGTCGA 182647 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 |||| | |||||||| ||||||| |||| | |||||| | ||| ||||| Sbjct 182648 TGTAAATGGCACGGTCGGCTGCCATGTTAATGATTGTCTTTTGTGAAATTTCCCA 182702 >seq2922 Length=128268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || ||||| | ||||||||||||||||| | |||||||| Sbjct 123526 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 123467 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || ||| | | ||| | ||| | || | || || || || || || Sbjct 123466 GTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGAGATTGATCAATA 123407 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || || || ||||| ||||||| |||| | |||||| | ||| ||||| | ||| Sbjct 123406 TAGACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTC 123347 Query 78370 CGGTAAATGGCCTTCAGCTCTT 78391 ||| | | |||||| |||| Sbjct 123346 TTGTATAAGTCCTTCAATTCTT 123325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548463646341360