Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq8857 533 2e-146 seq7678 307 1e-78 seq5149 143 3e-29 >seq8857 Length=8770 Score = 533 bits (590), Expect = 2e-146 Identities = 691/952 (73%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 6396 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 6338 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 |||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 6337 TTTATCATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 6278 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | |||||| | || || |||||||| || ||||| || || | | || | || Sbjct 6277 TCTGGATCTTTGCTTTACGGAAACAATATTATCTCCGGTGCCATTATTCCTACTTCTGCG 6218 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | ||||| || ||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 6217 GCTATCGGTTTGCACTTTTATCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATAC 6158 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 6157 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTAGGTGTAGCTTGTTACATG 6098 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||| |||| | | || || ||||| |||||||| |||||| || Sbjct 6097 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTAT 6038 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | || ||| | ||||||||| Sbjct 6037 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGC 5978 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||| Sbjct 5977 TTTTCTGATGGTATGCCTCTAGGCATTTCTGGTACTTTCAACTTTATGATTGTATTCCAG 5918 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || || |||||||| || ||||||||||| || ||| | || ||||| ||||| |||||| Sbjct 5917 GCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGT 5858 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || || || ||||| || | || |||||| | | || || || Sbjct 5857 GGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 5798 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | |||||||||||||| ||||| ||||| || || || Sbjct 5797 ACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGTCAAGAGGAAGAAACTTATAAT 5738 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||||||||| || ||||| ||||| || | |||||||| ||||| |||||| ||| Sbjct 5737 ATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 5678 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||| | || || | || ||| | | || ||||||||||| Sbjct 5677 TCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCCGTTATCGGTATTTGGTTTACTGCT 5618 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || ||||| ||||| | || |||||||| ||||| || ||||| | Sbjct 5617 TTAGGTATTAGTACTATGGCTTTCAATTTAAATGGTTTCAATTTCAATCAATCTGTAGTT 5558 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| || | |||||| ||||||| || ||||||||| Sbjct 5557 GATAGTCAAGGTCGTGTAATTAATACCTGAGCTGATATCATTAACCGCGCTAACCTTGGT 5498 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 177097 |||||||||||||| || ||||||||||| |||||||| || ||||| |||| Sbjct 5497 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 5446 >seq7678 Length=557 Score = 307 bits (340), Expect = 1e-78 Identities = 327/425 (77%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 176719 GTTACTTCTTCACTTGTTA-GAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAA 176777 |||||||| || |||| || | || || || |||| |||||||||||||||||||||||| Sbjct 539 GTTACTTCCTC-CTTGGTACGTGAAACCACAGAAACCGAATCACAAAACTACGGTTACAA 481 Query 176778 ATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCT 176837 ||||||||||||||||| || |||||||| |||||||||||||||||||||||||| | Sbjct 480 GTTCGGACAAGAAGAAGAAACCTACAACATCGTAGCTGCACACGGTTACTTTGGTCGGTT 421 Query 176838 TATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGT---CTTCACTTCTTCCTTGCAGC 176894 |||||||| || ||||| ||||| ||| || || || ||||||||| | || || Sbjct 420 GATCTTCCAATACGCTTCCTTCAACAAC---AGCCGTTCACTGCACTTCTTCTTGGCTGC 364 Query 176895 ATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCT 176954 || ||||| | | ||||||||||| || | ||| | |||||||||| |||||||| Sbjct 363 ATGGCCAGTAATCGGTATCTGGTTTACCGCTTTAGGTATCAGCACAATGGCGTTCAACCT 304 Query 176955 TAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC-TGGTAAAGTGATTCCTACAT 177013 ||||| |||||||||||||| || || | || ||| ||| || || |||| | Sbjct 303 GAACGGATTCAACTTCAACCAATCAGTAATCGA-TTCTCAAGGTCGCGTCATCGCTACTT 245 Query 177014 GGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTC 177073 ||| || | | ||||| || ||| | ||||||||||| |||||||||||||| |||| Sbjct 244 GGGCTGACGTAATCAACCGCGCTAACTTGGGTATGGAAGTCATGCACGAGCGTAACGCTC 185 Query 177074 ACAACTTCCCACTTGACCTTGCTGCTGCAGAGACAACTCAGGTTGCTCTTACTGCACCAT 177133 |||||||||| | ||| | ||||||| || ||| || ||| | |||||||| Sbjct 184 ACAACTTCCCCTTAGACTTGGCTGCTGGTGAAGTTGCTCCTGTGGCTTTAACTGCACCTG 125 Query 177134 CAATC 177138 ||||| Sbjct 124 CAATC 120 >seq5149 Length=487 Score = 143 bits (158), Expect = 3e-29 Identities = 250/361 (69%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 19347 CGTGGTCGTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTA 19406 |||||| || |||| | ||||| | || || |||| |||||| || |||| || | Sbjct 10 CGTGGTATAATTCACTTTAAGTTTTATAAATGGATCGTCTGTGAAGTTTGTGCGAGGTTT 69 Query 19407 TGCCCTATCAATCTACCAGTGGTGGATTGGGTGATGAACAAA-CAGACAAAGAAGAAAGA 19465 || | || | ||||| || | |||| || | | ||| | ||||| |||| | | Sbjct 70 TGTCTCATTTACCTACCTGTACTAGATTTGGAACTTGATAAAGCTAACAAA-AAGACACA 128 Query 19466 ACTTAGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTA 19525 || | | || ||| |||||| | |||||| ||||||||||||| || || || Sbjct 129 GCTCAAGCACTACATGATTTTCTTTGGCGTTTGTATTATCTGCGGTAACTGTGTGGAATA 188 Query 19526 TTGCCCAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACA 19585 |||||| || |||||| |||| ||||||||||||||||| | | | | || | || Sbjct 189 TTGCCCGACTAACTGTTTATCGATGACAGAAGAATATGAGCTATCCGCCTAAGATCGCCA 248 Query 19586 TCAACTTAACTTTGATAACGTCGCTCTTGGACGATTGCCCACTAATGTTACAACTGATCC 19645 | || | |||| |||||||| || ||||| || |||| || ||||||| ||| || Sbjct 249 TGAATTGAACTACGATAACGTAGCACTTGGTCGTCTGCCTTACAAAGTTACAAATGACCC 308 Query 19646 CTCAGTTAGACCGTTGCGTGAGCTTACTTATTTACCCAAAGGTGAGATGGATCCTCACAA 19705 || | ||| ||||| || || ||| |||||||| |||| |||||||| ||| | Sbjct 309 AATGGTGACACCATTGCGCGAACTAGTTTACTTACCCAAGGGTGTCATGGATCCCCACGA 368 Query 19706 T 19706 | Sbjct 369 T 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603427117918080