Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq1378 199 7e-47 seq4801 84.2 4e-12 >seq1378 Length=479 Score = 199 bits (220), Expect = 7e-47 Identities = 296/415 (71%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 28200 CTGCTGTTTCTCAAAGCGGGGCAGGGGGTGACGGCCAGCGGTaaaaaaaTCCCGCAGATC 28259 ||||||||||| ||||| || || ||||||||||||||| || || ||| | Sbjct 69 CTGCTGTTTCTGCGTCCGGGGAGCGGCGTCACGGCCAGCGGTAAACCCATTCCACAGCTG 128 Query 28260 ACCATCACCCG-CAGCGACGGTGACCGTCA-TCATTTTGCGATTGCTGACCGTGGAGCCT 28317 || || || || ||| ||||||||||| || | || || || |||||||| || || | Sbjct 129 ACGATTACACGACAG-GACGGTGACCGCCACACCTTCAGC-ATCGCTGACCGGGGCGCAT 186 Query 28318 ATACCGGCGTAACGGCAAAGTGGCTTCACACCAAAGACCCGAAGCCGCAAAAGCAGAAGG 28377 |||||||||| ||||| | ||||| || |||| ||| ||||||||| || |||| Sbjct 187 ATACCGGCGTGACGGCCAGCTGGCTGCATACCAGAGATCCGAAGCCGAAA------AAGG 240 Query 28378 TAAAACTGAAACGCAAAAAGAAAGAGAAACACCTGCGCGCACTGGAGCACCCGAAAGCGA 28437 |||| | |||||||| | ||| |||||||||||||| |||||||| || |||| Sbjct 241 TAAAGGTCAAACGCAAGCCGCGAGAAAAACACCTGCGCGCCTTGGAGCACACGGCGGCGA 300 Query 28438 AACCAGTCACGCAGAAGAAAGCGCCAAAAGTACCGGAAGCGCGCGAAGGTGAATACATGG 28497 || | | | ||| | ||||| |||||||| ||||| || || || ||| Sbjct 301 AA------AAGAAAAAGGTGGTTACAAAAACGCCGGAAGCACGCGAGGGGGATTATCTGG 354 Query 28498 CCGGTGAGGCTGACAACGTTTTTGCCCTGACCACGGTATATGCCACGAAAGCGCAGGCCA 28557 ||| | || ||||| ||| ||| ||||||| || |||| ||||| || | Sbjct 355 CCGCCACCGAAGATAACGTGTTTATGCTGCCCACGGTTTACGCCATCAAAGCCGCCGCGA 414 Query 28558 TGCGCGCCGCTCAGGCGAAGTGGGATAAGCTGCAACGGGGCGTGGCGGAGTTCTC 28612 |||||||||| |||| || ||||| |||||||| ||||| || || ||||| || Sbjct 415 TGCGCGCCGCAAAGGCCAAATGGGACAAGCTGCAGCGGGGTGTTGCTGAGTTTTC 469 >seq4801 Length=500 Score = 84.2 bits (92), Expect = 4e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 1188 AATCGTCAGCCAGTCTTCTGGTCTGAGTGGTGCAAGGTTGTTGAGTCTTGCCCAATGTGT 1247 ||| || | |||||||| ||||| ||||| ||| ||||||||| |||||||||| |||| Sbjct 44 AATTGTTAACCAGTCTTTTGGTCGGAGTGCTGCGAGGTTGTTGCATCTTGCCCAAAGTGT 103 Query 1248 GCGAGAGCCGG 1258 ||||||||||| Sbjct 104 GCGAGAGCCGG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93426903816522