Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4029 98.7 7e-16 seq2811 89.7 4e-13 seq1626 84.2 2e-11 >seq4029 Length=108955 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || ||| | || || || |||||| |||| || ||| Sbjct 14066 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCT 14125 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | ||||| ||||| || || ||||| |||||| |||| | Sbjct 14126 TCAGACACTATTGACAAT--GTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTG 14183 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || || |||||||| |||| | | ||||| || | Sbjct 14184 ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACT 14243 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||||| || ||||||||| | ||| | || || Sbjct 14244 ACAACATCCAAAAGGAGTCCACTTTACACTTGGTTTTGAGATTGAGAGGTGG 14295 >seq2811 Length=58406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||||| || ||||| ||| || | || || ||| || Sbjct 27423 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 27364 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| ||||| ||||| |||||| |||| || | Sbjct 27363 GACACTATTGACAAC--GTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATC 27306 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACG----AACGCAGCTTGTCCGAT 27963 | ||| | || ||||||||||| || ||| |||| |||| ||||| |||| ||| Sbjct 27305 AACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGC----TGTCTGAT 27250 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || ||| | || ||||| ||| | ||| | || || Sbjct 27249 TACAACATTCAGAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 27197 >seq1626 Length=97905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||| | || || ||||| || || |||||||| Sbjct 62697 GACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAA 62638 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||||||||| |||||||| ||||| || |||||| ||||| || ||| Sbjct 62637 GACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACATTTAGTCTTG 62578 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 62577 AGATTGAGAGGTGG 62564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355823717645913