Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq170 154 1e-32 seq10 123 2e-23 >seq170 Length=39039 Score = 154 bits (170), Expect = 1e-32 Identities = 370/560 (66%), Gaps = 31/560 (6%) Strand=Plus/Plus Query 96996 AAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAAT 97055 || ||||||| | ||||| || || ||| ||| | | || ||| | | |||||||| Sbjct 18590 AATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGAGATTTGTTCTTTCAAGGCATCAAT 18649 Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 ||| | ||||| || ||||| || ||||| ||||| || || || || | | || Sbjct 18650 GTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCCATGTC 18709 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 || | || ||||| | ||| || | || ||| ||||||||||| || || || Sbjct 18710 GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAACGGTACTCC 18769 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAG-----------------C 97218 | |||||||| || | ||| || || || ||||| | Sbjct 18770 CAACCCCATATCGCAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACCGGATCC 18829 Query 97219 TT-TCCATC---------ACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGC 97268 || ||| || || ||||| ||||| || | ||| || || ||||| || Sbjct 18830 TTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGTGGCAAAGC 18889 Query 97269 CATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTT 97328 |||||| || ||| ||||| |||| ||| | |||||||||||| || || Sbjct 18890 CATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTAGGGATT 18949 Query 97329 TGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTG 97388 ||| | | ||| ||| | ||| || |||||||||| |||| |||| ||| | || Sbjct 18950 TGTCTTAAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATAGTCGT- 19008 Query 97389 CTTAAGAC--CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCA 97446 | | || |||| |||| || ||||||||||||||||| ||||||||||| || || Sbjct 19009 CATCGCACGTCTTG-TATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGGGCCCC 19067 Query 97447 AGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTT 97506 || |||||| ||| ||||| ||| || | |||||||||||| | ||||||||| Sbjct 19068 AGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATCCATTA 19127 Query 97507 GCATCCCAAATGTGCACACC 97526 | |||||||| | ||||| Sbjct 19128 CCGTCCCAAATCTTAACACC 19147 >seq10 Length=295215 Score = 123 bits (136), Expect = 2e-23 Identities = 412/640 (64%), Gaps = 41/640 (6%) Strand=Plus/Plus Query 96912 CATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCATTTGCT---TTAAA 96968 ||||| || || |||| ||| || |||| ||| ||| | || | || ||||| Sbjct 184741 CATTTGGATTCTTGGGTGAGGATTGTAGTCTTC---AATTTCGAAATCTTCTAACTTAAA 184797 Query 96969 ATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCG 97028 |||||||| || ||| | || || ||||| | | ||||| || || ||| || Sbjct 184798 GTCATCAATTTCTGTAATGTCCCTTTTAATCTTTAATTTGGGGAATGGTCTTGGATCTCT 184857 Query 97029 CGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGT 97088 | || || || | | |||||||| |||| | ||| | || ||||| || ||||| Sbjct 184858 TGAAATTTGTTCATTCAAGGCATCAATATGATCCTTATACACATGTGCATCCCCCAAAGT 184917 Query 97089 GTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGA 97148 ||||| || || || || | | |||| ||| | || ||||| | ||| | ||| | Sbjct 184918 ATGAATGAACTCACCCGGTTCCATATCAACGACTTTAGCTATCATTCTAGTCAGTAGCGC 184977 Query 97149 ATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTG 97208 ||| || || ||||| ||||| || || ||||||||| || | ||| || | | Sbjct 184978 ATATGAGGCGATATTAAATGGCACACCGAGCCCCATATCACAGGAACGTTGGTACAGCAA 185037 Query 97209 ACAGGAAAG-------------CTT-----TCCATC---------ACACACATAAAACTG 97241 || ||||| ||| ||| || || |||||||| || Sbjct 185038 GCACGAAAGGCGAGGTTTACCACTTCCACTTCCCTCTTTGGGGAAACTGACATAAAATTG 185097 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 || | || || || || || ||||| || || |||| |||||||| | Sbjct 185098 TGAAAAAATGTGGCATGGCGGTAAGGCCATCTTGTCAAAATCTGCAGGGTTCCAAGCGCT 185157 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTG 97361 ||| | ||||||||||| |||||||| | || | | || | |||||| | || Sbjct 185158 CATGATGATTCTTCTATCATAAGGGTTTGTCTTTAATTTGTGTATAACCTGCTTCAGCTG 185217 Query 97362 ATCAACGCCTTCTCCACCATA---ATTGT-GCTTAAGACCTTGATATTCTGCTCCAAAAT 97417 ||| | |||| ||| ||| || || || || |||| |||| || ||||||| Sbjct 185218 ATCGATACCTTGTCCGGTATAGTCATCGTCGC---AGGTCTTG-TATTTGGCACCAAAAT 185273 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA 97477 | ||||||||||| ||||||||||| || || || ||| ||| ||||| || || | Sbjct 185274 GTCTCCATTGGAACCCATAAACAGGACCCAGATCCCCTACTTTCCTATCCATGAGTCCCA 185333 Query 97478 GCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 ||| || ||||| | ||||||||| | |||||||| Sbjct 185334 TCTTGTCCAAATATTCACGAGATCCATTACCGTCCCAAAT 185373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346743882726440