Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq189 107 1e-18 seq196 102 6e-17 seq12 93.3 3e-14 seq4 91.5 1e-13 seq139 89.7 4e-13 seq56 89.7 4e-13 seq90 87.8 1e-12 seq7730 84.2 2e-11 >seq189 Length=35770 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 27473 ACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 27532 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 27533 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 27592 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 27593 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTA 27652 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 27653 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 27684 >seq196 Length=33893 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||||||||| | || ||| ||| ||||||||||| || || Sbjct 3258 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 3317 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | ||||||||| || || | |||||||| || ||| | | |||| Sbjct 3318 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 3377 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | |||||| | || || ||||| || Sbjct 3378 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 3437 Query 18309 TTTACAAAA 18317 || |||||| Sbjct 3438 TTGACAAAA 3446 >seq12 Length=290010 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| ||||| || |||||||| | || ||| ||| ||||||||| Sbjct 42415 ATGTAAAGTG--GATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTACCGTCTTCCAAT 42358 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 || || || ||| |||| | ||||||||| || || | |||||||| || ||| Sbjct 42357 TGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATC 42298 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | | |||||| | ||| |||||| | || ||| | |||||| | || || Sbjct 42297 TTTGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCA 42238 Query 18300 GTCAATGTTTTTACAAAA 18317 ||||| ||||| |||||| Sbjct 42237 GTCAAAGTTTTGACAAAA 42220 >seq4 Length=403504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| || Sbjct 386979 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 386920 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||| ||| || || ||| | || ||||||||||| || || | |||||| Sbjct 386919 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 386860 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | |||||| | | | |||||| | |||| || | ||| Sbjct 386859 TTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCTAAGGTT 386800 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| ||| || || || |||||||| Sbjct 386799 ATGGTCTTACCAGTCAGTGTCTTGACGAAGATTTGCAT 386762 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| || Sbjct 387207 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 387148 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||| ||| || || ||| | || ||||||||||| || || | |||||| Sbjct 387147 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 387088 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | |||||| | | | |||||| | |||| || | ||| Sbjct 387087 TTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCTAAGGTT 387028 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| ||| || || || |||||||| Sbjct 387027 ATGGTCTTACCAGTCAGTGTCTTGACGAAGATTTGCAT 386990 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| || Sbjct 386751 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 386692 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||| ||| || || ||| | || ||||||||||| || || | |||||| Sbjct 386691 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 386632 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | |||||| | | | ||||| || |||| || | || Sbjct 386631 TTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCCAAAGTA 386572 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| || || || ||||| ||||| Sbjct 386571 ATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 386534 >seq139 Length=48224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | || ||| ||| |||||| Sbjct 32692 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCC 32633 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| || || ||| | || | |||||||||||| || | |||||||| || | Sbjct 32632 AGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGA 32573 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||||| | ||| |||||| | || || | ||| || | || Sbjct 32572 ATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTC 32513 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | ||||| || ||||||||||| Sbjct 32512 CCTGTTAGAGTTTTGACGAAAATTTGCAT 32484 >seq56 Length=105907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || || || ||||| ||||||||||| | || ||| | | |||||| Sbjct 95199 ACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCC 95258 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || | Sbjct 95259 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGA 95318 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| | || ||||| ||| || | || Sbjct 95319 ATCTTAGACTTGACATTGTCAATAGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTA 95378 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 95379 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 95410 >seq90 Length=74341 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| ||||||||||||||||||| || ||| ||| ||||||||| Sbjct 34494 ATGTAAAGTG--GATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAAT 34437 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || || || ||| |||| | ||||||||| || Sbjct 34436 TGCTTACCAGCAAAGATCAATCTTTGTTGGTC 34405 >seq7730 Length=350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | || ||| ||| ||||| Sbjct 189 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCT 130 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || || || || ||| |||| | |||||||||||| || | |||||||| || | Sbjct 129 AACTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGA 70 Query 18237 ATTT 18240 |||| Sbjct 69 ATTT 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379300116063540