Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq312 136 4e-27 seq292 136 4e-27 >seq312 Length=16270 Score = 136 bits (150), Expect = 4e-27 Identities = 340/509 (67%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || || ||||||| || | |||||| ||||| ||||| || ||||||| |||| ||| Sbjct 1266 CCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTT 1325 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || ||||| || || | ||||| || ||||| || || | || |||| | ||||| Sbjct 1326 TTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAG 1385 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTC 14071 || | || || ||| |||||| | || | || | || |||||| || ||||||||| Sbjct 1386 GCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTC 1444 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT 14131 | || | || || || | ||| ||||| || || |||| | ||||| Sbjct 1445 GGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTT 1504 Query 14132 AG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14189 || | ||||| |||| ||||| || | ||| || |||||||||| || ||||| Sbjct 1505 AGGGTCCTTGA--TGTAGGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCA 1562 Query 14190 ATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAAT 14249 || || || ||||| || || | | || || | ||| ||||| | | | || Sbjct 1563 ATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAG 1622 Query 14250 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTT 14309 |||| |||| ||||||||||| ||||| ||| ||| || ||||| || | | | Sbjct 1623 TTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTG 1682 Query 14310 TTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAATC--GGATAAATCCTTAG 14364 ||| || || ||| | | ||| | | || ||||| || |||| |||||||| Sbjct 1683 GAAATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGAT--ATCCTTAG 1740 Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAA 14393 | | ||| | ||| ||| | ||||| ||| Sbjct 1741 ACAAATCAATTTCTTCAGCGGTCCAGAAA 1769 >seq292 Length=18136 Score = 136 bits (150), Expect = 4e-27 Identities = 340/509 (67%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || || ||||||| || | |||||| ||||| ||||| || ||||||| |||| ||| Sbjct 3399 CCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTT 3458 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || ||||| || || | ||||| || ||||| || || | || |||| | ||||| Sbjct 3459 TTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAG 3518 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTC 14071 || | || || ||| |||||| | || | || | || |||||| || ||||||||| Sbjct 3519 GCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTC 3577 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT 14131 | || | || || || | ||| ||||| || || |||| | ||||| Sbjct 3578 GGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTT 3637 Query 14132 AG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14189 || | ||||| |||| ||||| || | ||| || |||||||||| || ||||| Sbjct 3638 AGGGTCCTTGA--TGTAGGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCA 3695 Query 14190 ATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAAT 14249 || || || ||||| || || | | || || | ||| ||||| | | | || Sbjct 3696 ATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAG 3755 Query 14250 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTT 14309 |||| |||| ||||||||||| ||||| ||| ||| || ||||| || | | | Sbjct 3756 TTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTG 3815 Query 14310 TTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAATC--GGATAAATCCTTAG 14364 ||| || || ||| | | ||| | | || ||||| || |||| |||||||| Sbjct 3816 GAAATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGAT--ATCCTTAG 3873 Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAA 14393 | | ||| | ||| ||| | ||||| ||| Sbjct 3874 ACAAATCAATTTCTTCAGCGGTCCAGAAA 3902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479671080272800