Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq170 93.3 6e-14 seq38 89.7 8e-13 >seq170 Length=39039 Score = 93.3 bits (102), Expect = 6e-14 Identities = 180/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 70033 TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATT 70092 ||| ||| | | || |||| || || ||| || ||||||||||| || || ||||| Sbjct 19109 TTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTTTATGGATT 19050 Query 70093 CCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGA-GACAGACTATTCGGGTCAG 70150 || |||||||| | || | || || |||| ||||| ||| |||||| | || || Sbjct 19049 TCAATGGAGGCATTTTGGTGCTAAATACA-AGACGTGCGATGAC-GACTATACTGGACAA 18992 Query 70151 GGTGTTGATCAATTGCAGACA-ATCATTGACACTCTCAAGACCAATCCAACAGATAGGAG 70209 ||| ||||||||||| | ||| | ||| | | || ||||| ||||| ||||| || Sbjct 18991 GGTATTGATCAATTG-AAACAGGTTATTCATAAACTTAAGACAAATCCCTACGATAGAAG 18933 Query 70210 GATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCA 70269 ||| | ||| | | ||||| || || ||||| || ||||||| | ||||| || || Sbjct 18932 AATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGCCACCATGCCA 18873 Query 70270 CTGTTTGGCTCAGTTTTA 70287 ||| | ||||| || Sbjct 18872 TATTTTTTCACAGTTCTA 18855 >seq38 Length=131761 Score = 89.7 bits (98), Expect = 8e-13 Identities = 310/475 (65%), Gaps = 13/475 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || |||||| | || || || | ||| | ||| ||||||| ||||| || || Sbjct 125691 CAGGGTGGTAATAAAAGACCTGGTGCGTTTGCCCTTTACCTGGAACCATGGCATGCTGAT 125750 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA---CGAGCCAGG 96992 | ||||| ||||| || || | || ||| || | |||||| | || || || Sbjct 125751 ATATTTGATTTTATTGATATTAGGAAGAACCACGG---TAAAGAGGAAATTCGTGCAAGA 125807 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 || ||||| ||| || ||| | || ||| | ||||||||||| ||| | || ||| Sbjct 125808 GATTTGTTCCCTGCTCTATGGATTCCTGATCTTTTCATGAAGCGTGTCGAAGAAAATGGG 125867 Query 97053 TACTGGAGCCTAATGTGCCCCGAC-TCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 ||||| | | || | || || || | || ||| | |||||| | || || || Sbjct 125868 ACCTGGA-CATTATTCTCTCCAACATCAGCTCCTGGTTTAAGCGATTGTTACGGTGACGA 125926 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGC 97171 ||||||||| || || ||||||| |||| || || || |||| | || | || Sbjct 125927 GTTTGAGGCTCTATATACCCGCTACGAGAAAGAAGGTCG--TGGTAAGACTA-TCAAAGC 125983 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | || | ||| | |||| || ||||| || ||||| || || | | || | Sbjct 125984 CCAAAAATTATGGTATTCCATTTTGGAAGCTCAAACTGAAACTGGTACACCTTTCGTTGT 126043 Query 97232 CTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || | | || | | || ||| |||| || ||||||| | Sbjct 126044 TTACAAGGAT-GCTTGTAACAGAAAATCTAATCAAAAAAACTTAGGTGTCATCAAGTCAT 126102 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 | || | ||| |||||||| || ||| | |||| || || || || ||||| Sbjct 126103 CAAACTTATGCTGTGAAATTGTTGAATACTCAGCTCCAGATGAAACTGCTGTTTG 126157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740971273325920