Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq17 158 9e-34 >seq17 Length=237104 Score = 158 bits (174), Expect = 9e-34 Identities = 238/336 (71%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACTGGCAGAAATAAC 99288 || ||||| |||||||||| | || |||| || ||| |||| ||||| || | Sbjct 111858 TCCGAGACCCACGCGCCCTGCACGCGCATGGGCTTGGCCGCGCCCATGGGCAGGAACAGG 111799 Query 99289 CCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCG 99348 |||| ||| || ||||| | ||| || ||| || ||| || | || || || Sbjct 111798 GCGTCGCCCTGGCCGATGAGCTTCTCCGCGCCGGGCTGGTCGAGCACGACGCGCGAGTCC 111739 Query 99349 GTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTC 99408 | |||||||| || ||||||| |||||||| |||||||| |||||||||||||||| Sbjct 111738 GCGAGGGACGACGTCGCGAACGCGAGCCGCGACGGCACGTTCGCCTTGATGAGGCCCGTC 111679 Query 99409 ACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCC 99468 || || || || || || ||||||||||| || || || || ||||| ||||| ||||| Sbjct 111678 ACGACGTCGACCGACGGGCGCTGCGTCGCGAGCACCAGGTGGATGCCCGCCGCGCGCGCG 111619 Query 99469 TTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGA 99528 ||||| |||||| || |||||| || || | | || | |||||||||| Sbjct 111618 AGCTGCGTGATGCGCTGGATCGAGGCCTCGACGTC--GCGCGGGGCGA-CCATCATGAGG 111562 Query 99529 TCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 || ||||| || || || || |||| | ||| ||| Sbjct 111561 TCGGCGAGCTCGTCGACGACGACCAGCAGGTACGGG 111526 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 99691 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGT 99750 ||||| ||||| || | ||| || |||||||| | |||||||| | | | ||| Sbjct 111339 AGGTGCGGGATGCCCTCGTAGATCGTCAGCTCGACGCGCTTGGGGTCCACGAGCACGAGC 111280 Query 99751 TTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTG 99810 ||| | || || |||| || ||| | ||| | ||| |||||||||||||| Sbjct 111279 CGCACCTGCTCGGGCGTCGATCGCATGAGGATCGACGTGATCATGGAGTTGATGAAGCTC 111220 Query 99811 GACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGG 99870 |||||||||| || |||||||| || || || | || |||||||| || |||||| | Sbjct 111219 GACTTGCCCGCGCCCGTCGCGCCCGCGACGAGGATGTGGGGCATCTTCGCGAGGTTCGCG 111160 Query 99871 GAGATGTCCTTGCCCTCGACGTCCTTGCCCAC 99902 || || |||||||||||||||||| || Sbjct 111159 ACGACGTAGCCGCCCTCGACGTCCTTGCCGAC 111128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354602173544712