Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015-
12-30] 9,492 sequences; 32,325,519 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 5e-25
seq139 86.0 5e-12
>seq4
Length=403504
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| ||| || || |||| ||||| |||||||||||||| ||||| ||||| | |
Sbjct 387444 CCACCTCTTAGTCTTAGGACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCCGAC 387385
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || |||| |||| ||| || || ||| |||| | || |||||||||| |||
Sbjct 387384 AAAGTTCTGCCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGA 387325
Query 16829 ACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| ||||||||| | | | | || || ||| || | | | | |||||| || |||
Sbjct 387324 ATGCCCTCTTTATCCTGTATCTTACT-CTTTACATTGTCGATCGTGTCGGAGGACTCGAC 387266
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || ||||| || ||||| | || ||||| |||||||||||
Sbjct 387265 CTCCAAAGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 387218
Score = 95.1 bits (104), Expect = 1e-14
Identities = 166/241 (69%), Gaps = 3/241 (1%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || |||| |||| || || || ||||||||||| ||||| ||||| | |
Sbjct 386760 CCACCTCTCAGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGAC 386701
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||||| ||| || || ||| |||| || | |||||||| |||
Sbjct 386700 AAAGTTCTACCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGA 386641
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || || ||||| ||| | ||| || | | | | |||||| || |||
Sbjct 386640 ATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCGGAGGACTCGACC 386581
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCTTAT 16948
|||| || ||||| || || |||| || ||||| ||||||||||| ||| |||||
Sbjct 386580 TCCAAAGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATAGTGT---CTTAT 386524
Query 16949 T 16949
|
Sbjct 386523 T 386523
>seq139
Length=48224
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| |||||| || || | ||| | ||||||||||| || |||||||| || | |
Sbjct 32254 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 32195
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| || | || || || ||| | || | | ||||| || |||
Sbjct 32194 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 32135
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || || ||||| ||||| | ||| || | | | | || ||| | || |
Sbjct 32134 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 32075
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || |||||||| ||||||| || ||||| |||||||||||
Sbjct 32074 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 32028
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780
|||| |||| || || || || |||||||| ||||||||||| | || |||| | ||
Sbjct 32470 CTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCG 32411
Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840
|| || | || || || ||| | || | || |||||| || ||| | || || |||
Sbjct 32410 TCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTG 32351
Query 16841 TCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| |||| | ||| || | | | |||||| || || || | ||||||
Sbjct 32350 TCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATG 32291
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| ||||||| || || ||||| ||||||||
Sbjct 32290 GTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 32256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405041137901080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |