Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq312 127 2e-24 seq292 127 2e-24 >seq312 Length=16270 Score = 127 bits (140), Expect = 2e-24 Identities = 485/748 (65%), Gaps = 34/748 (5%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||||||| || |||| | ||||| ||||| || ||||| || | Sbjct 941 CATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGC 1000 Query 92850 CAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATA---CTTTTCAC 92903 ||| || || | ||| | | || || || | | | || || || ||| | || Sbjct 1001 CAAGGAGAT-GTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTAC 1059 Query 92904 CGAT--CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 ||| |||| ||| | ||| || || || || || | ||| || ||| || || Sbjct 1060 CGAAAGCAAC-----CAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTC 1114 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCT-CGAT 93018 | ||||| ||||| | | || |||| ||||| |||||| |||||| | | || Sbjct 1115 AGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTC---CAAGAAGTATCTTTGTTCAAT 1171 Query 93019 TACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATT--TGG---TGGTTT-TTGTAC 93072 | | || || || | | |||| | || || || ||| |||||| || | | Sbjct 1172 TTCCACAGCCTCGGTGACAATTTTT-----TCAACAATGGCTGGGTCTGGTTTGTTCTTC 1226 Query 93073 GACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA 93132 | || | ||| ||||| ||||||||||| || ||||||||||||| | ||||| Sbjct 1227 AA-ATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAA 1285 Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 || ||| || |||||||| || | || |||| || || | ||| || || || || Sbjct 1286 TTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGC 1345 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 ||| ||| || ||||| | |||||| | || ||||| || || | | ||| |||| Sbjct 1346 AAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAA 1405 Query 93253 ATTTGCGGAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 ||| | | || |||||| |||||||||| ||||| || | || | Sbjct 1406 CAAGGCGTCA-GCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTG 1464 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 | | || | || || || || | | | || | || | | || ||||| |||| Sbjct 1465 GGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGTAT 1524 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 |||| |||| || || ||||||| || | ||| || || |||||||| ||||||| Sbjct 1525 CGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGA 1584 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGA 93491 ||| | || || | || || ||||| || || | || || | |||||||| | Sbjct 1585 AACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAA 1644 Query 93492 CTATACCATCGGATGCTGCaaaaaaaGC 93519 | ||||| || || || || ||||| || Sbjct 1645 CAATACCGTCAGAAGCGGCGAAAAAGGC 1672 >seq292 Length=18136 Score = 127 bits (140), Expect = 2e-24 Identities = 485/748 (65%), Gaps = 34/748 (5%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||||||| || |||| | ||||| ||||| || ||||| || | Sbjct 3074 CATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGC 3133 Query 92850 CAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATA---CTTTTCAC 92903 ||| || || | ||| | | || || || | | | || || || ||| | || Sbjct 3134 CAAGGAGAT-GTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTAC 3192 Query 92904 CGAT--CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 ||| |||| ||| | ||| || || || || || | ||| || ||| || || Sbjct 3193 CGAAAGCAAC-----CAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTC 3247 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCT-CGAT 93018 | ||||| ||||| | | || |||| ||||| |||||| |||||| | | || Sbjct 3248 AGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTC---CAAGAAGTATCTTTGTTCAAT 3304 Query 93019 TACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATT--TGG---TGGTTT-TTGTAC 93072 | | || || || | | |||| | || || || ||| |||||| || | | Sbjct 3305 TTCCACAGCCTCGGTGACAATTTTT-----TCAACAATGGCTGGGTCTGGTTTGTTCTTC 3359 Query 93073 GACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA 93132 | || | ||| ||||| ||||||||||| || ||||||||||||| | ||||| Sbjct 3360 AA-ATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAA 3418 Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 || ||| || |||||||| || | || |||| || || | ||| || || || || Sbjct 3419 TTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGC 3478 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 ||| ||| || ||||| | |||||| | || ||||| || || | | ||| |||| Sbjct 3479 AAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAA 3538 Query 93253 ATTTGCGGAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 ||| | | || |||||| |||||||||| ||||| || | || | Sbjct 3539 CAAGGCGTCA-GCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTG 3597 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 | | || | || || || || | | | || | || | | || ||||| |||| Sbjct 3598 GGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGTAT 3657 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 |||| |||| || || ||||||| || | ||| || || |||||||| ||||||| Sbjct 3658 CGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGA 3717 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGA 93491 ||| | || || | || || ||||| || || | || || | |||||||| | Sbjct 3718 AACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAA 3777 Query 93492 CTATACCATCGGATGCTGCaaaaaaaGC 93519 | ||||| || || || || ||||| || Sbjct 3778 CAATACCGTCAGAAGCGGCGAAAAAGGC 3805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556794728466080