Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq312 113 5e-20 seq292 113 5e-20 seq139 98.7 1e-15 >seq312 Length=16270 Score = 113 bits (124), Expect = 5e-20 Identities = 522/816 (64%), Gaps = 23/816 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTT- 132683 || || || || ||||| || || ||||||| ||| ||| ||||| |||||||| Sbjct 975 TTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTT 1034 Query 132684 --GGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||| ||| | |||| | |||| || | || | ||| |||||||| |||||| Sbjct 1035 TCGACCTTGTAGTATTTCTTGTTACCGAA-AG--CAACCAACAGTCTGTCGGCGACGAAC 1091 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 || | |||||| ||| || || | || |||| | || || | || || Sbjct 1092 TCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC 1151 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 || | | ||| || || | || || |||||||| |||| ||| || | | Sbjct 1152 AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAATTTTTTCAACAATGGCTGGG 1211 Query 132862 -CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 || | ||| | |||||| ||||| |||||| ||||||||| ||||| || || Sbjct 1212 TCTGGTTTGTT-CTTCAAATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTC 1270 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| || | || | ||||||| || || || |||||||| | || | ||||| | Sbjct 1271 GTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAA 1330 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| || || || || ||||| || || | || || || || || Sbjct 1331 CCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAAC 1390 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 || | || || ||| ||| || | || | ||||| | | ||||||||||||| Sbjct 1391 TAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTCGGCCT 1449 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTT---TCTCTTCCG 133156 | || || || || || | ||||| || ||||| || || | |||| | Sbjct 1450 TCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAA---GAATTCACTTTCTTTAG 1506 Query 133157 AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | |||||| ||||| | || || |||| ||||| | || || || Sbjct 1507 GGTCCTTGATGTAGGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCA 1566 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 |||||| || ||||| || | | ||||| | || ||||| | ||| | Sbjct 1567 TGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTT 1626 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG- 133335 | |||| ||||| || || || ||||| |||||||||||||| || || || | Sbjct 1627 CAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAAC--TCTGGA 1684 Query 133336 -ATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAG 133391 |||||| | |||||| ||||||| | | |||||| | | ||||| |||| Sbjct 1685 AATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGATATCCTTAGACAA 1744 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 || | || || ||||||| || || || ||||| Sbjct 1745 ATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGC 1780 >seq292 Length=18136 Score = 113 bits (124), Expect = 5e-20 Identities = 522/816 (64%), Gaps = 23/816 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTT- 132683 || || || || ||||| || || ||||||| ||| ||| ||||| |||||||| Sbjct 3108 TTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTT 3167 Query 132684 --GGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||| ||| | |||| | |||| || | || | ||| |||||||| |||||| Sbjct 3168 TCGACCTTGTAGTATTTCTTGTTACCGAA-AG--CAACCAACAGTCTGTCGGCGACGAAC 3224 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 || | |||||| ||| || || | || |||| | || || | || || Sbjct 3225 TCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC 3284 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 || | | ||| || || | || || |||||||| |||| ||| || | | Sbjct 3285 AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAATTTTTTCAACAATGGCTGGG 3344 Query 132862 -CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 || | ||| | |||||| ||||| |||||| ||||||||| ||||| || || Sbjct 3345 TCTGGTTTGTT-CTTCAAATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTC 3403 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| || | || | ||||||| || || || |||||||| | || | ||||| | Sbjct 3404 GTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAA 3463 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| || || || || ||||| || || | || || || || || Sbjct 3464 CCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAAC 3523 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 || | || || ||| ||| || | || | ||||| | | ||||||||||||| Sbjct 3524 TAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTCGGCCT 3582 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTT---TCTCTTCCG 133156 | || || || || || | ||||| || ||||| || || | |||| | Sbjct 3583 TCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAA---GAATTCACTTTCTTTAG 3639 Query 133157 AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | |||||| ||||| | || || |||| ||||| | || || || Sbjct 3640 GGTCCTTGATGTAGGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCA 3699 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 |||||| || ||||| || | | ||||| | || ||||| | ||| | Sbjct 3700 TGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTT 3759 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG- 133335 | |||| ||||| || || || ||||| |||||||||||||| || || || | Sbjct 3760 CAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAAC--TCTGGA 3817 Query 133336 -ATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAG 133391 |||||| | |||||| ||||||| | | |||||| | | ||||| |||| Sbjct 3818 AATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGATATCCTTAGACAA 3877 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 || | || || ||||||| || || || ||||| Sbjct 3878 ATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGC 3913 >seq139 Length=48224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || ||||||||||| | || || || || || Sbjct 32256 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 32315 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| ||||||| ||||| || || || || | || || Sbjct 32316 GACACGATCGATAACG-TTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 32374 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | || || || ||||| || |||| | ||| | |||||||| Sbjct 32375 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 32434 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || |||||| || | |||||||| || Sbjct 32435 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 32482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || || ||| | || || || | || Sbjct 32484 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 32543 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| |||| || ||||| || || ||||| | || || Sbjct 32544 GACACTATTGACAACGTCAAAAGTAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 32602 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| || || || || ||||| |||| | ||| | |||||||| Sbjct 32603 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACCTTGTCTGACTACAA 32662 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || |||||| || | |||||||| || Sbjct 32663 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 32710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500113454497280