Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq62 125 8e-24 seq19 116 4e-21 >seq62 Length=101292 Score = 125 bits (138), Expect = 8e-24 Identities = 323/488 (66%), Gaps = 12/488 (2%) Strand=Plus/Plus Query 154602 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 154661 || ||||| || ||| ||| || |||||||| || |||| | || ||||| ||| | Sbjct 6064 ATTACAGGTTTCGATGGTATTTCTTTACAACCAAATTCAGGTGCTCAAGGTGAATATACT 6123 Query 154662 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 154721 || ||| || |||| | | |||| || | ||| || || | | || || ||| Sbjct 6124 GGTCTGAGAGTAATCAGATCCTACCTGGAAAGCAAAGGTGAAAATCATCGTAACGTGTGT 6183 Query 154722 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAA 154781 || || || | || || ||||| || ||||| ||| ||| | ||||| || | ||| Sbjct 6184 TTAATCCCTGTATCCGCTCATGGTACAAATCCGGCTTCTGCCGCTATGGCGGGTTTAAAA 6243 Query 154782 GTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAA 154841 ||||| |||||| ||| | ||||| |||| | || || |||| || Sbjct 6244 GTTGTTCCTGTCAACTGTTTGCAGGATGGCTCATTAGATCTGGTTGACTTAAAGAATAAG 6303 Query 154842 GCAATCATGAATA-CATTT----GAACTGTCATGTATTATGATTACATACCCATCTACAC 154896 || |||| | |||| ||||| | | ||||| || || || ||||| Sbjct 6304 GC-----TGAACAACATTCTAAAGAACTAGCCGCCGTAATGATCACCTATCCTTCTACTT 6358 Query 154897 ATGGTGTATTTGAAACTAACATTAGACA-GATATGTAAGATCGTTCATGACAATGGTGGT 154955 | ||| |||||||| | ||| ||| | ||| | | ||||| ||| |||||| Sbjct 6359 ACGGTTTATTTGAACCAGGCATCCAACATGCTAT-TGATATCGTACATTCTTTTGGTGGA 6417 Query 154956 CAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAG 155015 || || ||| | ||||| || ||| | ||||| ||||| || ||| | ||| | || Sbjct 6418 CAAGTCTATTTGGATGGTGCTAATATGAATGCGCAGGTTGGGCTAACTTCACCCGGAGAT 6477 Query 155016 TATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGT 155075 |||||||||||| || || | || |||||||| ||||||| ||||| ||||| ||| Sbjct 6478 CTTGGTGCAGATGTTTGCCACTTGAATTTACATAAGACATTCTCCATTCCTCATGGTGGT 6537 Query 155076 GGAGGTCC 155083 || ||||| Sbjct 6538 GGTGGTCC 6545 >seq19 Length=221039 Score = 116 bits (128), Expect = 4e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 |||| ||| | |||||||| || || ||| || ||||| || || ||||| | | | Sbjct 174028 TTATTGGTAAGGGATACTACGGCACGATTTTGCCGCCAGTTATTCAAAGAAACCTATTGG 173969 Query 153265 AGAATCCTAGT-TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 | || || || |||||||| ||||| ||||| || || |||| ||||||||||| ||| Sbjct 173968 A-AAGCCCAGAATGGTACACTTCTTATACTCCATACCAGCCTGAAATATCTCAGGGTAGA 173910 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 |||||||| ||| | || | |||||| | | | || | || || || || | ||| Sbjct 173909 TTGGAAGCATTACTAAACTTCCAAACAGTAGTTTCCGATTTGACTGGTTTGCCTGTGGCA 173850 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATAAT 153443 ||||| || | || ||||||| || || || | ||||| |||||| | ||| |||| Sbjct 173849 AACGCCTCATTGTTGGATGAAGGTACCGCGGCTGGTGAAGCTATGCTACTGTCATTTAAT 173790 Query 153444 TCTACAAGAGATAAGAAG 153461 | | ||| | || ||| Sbjct 173789 ATTTCCAGAAAGAAAAAG 173772 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||| ||| |||| ||||| ||||| |||||||||||||| || || || | Sbjct 173444 CAAAGGTTCGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTCGCCGTTATT 173385 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || || || ||||| || |||||||||||||| ||| || || | |||| Sbjct 173384 GATAAACTGAACAGAAAAATTCCTGGCAGAATTGTTGGTATCTCCAAGGACCGCCTAGGT 173325 Query 153888 AATAAAG-CATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGC 153946 ||| | | ||| | ||||| |||| |||||||| ||||| || | | || ||||| Sbjct 173324 AATCCTGCCCTAC-GTTTAGCTTTACAAACTAGAGAACAGCACATTAAACGTGATAAAGC 173266 Query 153947 AACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 ||| ||||| ||||| ||||| || || |||||||| Sbjct 173265 AACTTCAAACATTTGCACCGCTCAAGCCCTTTTGGCTAAT 173226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579144076401280