Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq62 149 7e-31 seq19 111 2e-19 >seq62 Length=101292 Score = 149 bits (164), Expect = 7e-31 Identities = 338/504 (67%), Gaps = 12/504 (2%) Strand=Plus/Plus Query 159277 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 159336 || ||||| || ||| ||| || |||||||| || |||| | || ||||| ||| | Sbjct 6064 ATTACAGGTTTCGATGGTATTTCTTTACAACCAAATTCAGGTGCTCAAGGTGAATATACT 6123 Query 159337 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 159396 || ||| || |||| | | |||| || | ||| || || | | || || ||| Sbjct 6124 GGTCTGAGAGTAATCAGATCCTACCTGGAAAGCAAAGGTGAAAATCATCGTAACGTGTGT 6183 Query 159397 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAA 159456 || || || | || || ||||| || ||||| || || || | ||||| || | ||| Sbjct 6184 TTAATCCCTGTATCCGCTCATGGTACAAATCCGGCTTCTGCCGCTATGGCGGGTTTAAAA 6243 Query 159457 GTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAA 159516 ||||| |||||| ||| | |||||| |||| | || || |||| || Sbjct 6244 GTTGTTCCTGTCAACTGTTTGCAGGATGGCTCATTAGATCTGGTTGACTTAAAGAATAAG 6303 Query 159517 GCAATCATGAATA-CATTT----GAACTGTCATGTATTATGATTACATATCCATCTACAC 159571 || |||| | |||| ||||| | | ||||| || ||||| ||||| Sbjct 6304 GC-----TGAACAACATTCTAAAGAACTAGCCGCCGTAATGATCACCTATCCTTCTACTT 6358 Query 159572 ATGGTGTATTTGAAACAAACATCAGACA-GATATGTAAGATTGTTCATGAGAATGGTGGT 159630 | ||| |||||||| || |||| ||| | ||| | | || || ||| |||||| Sbjct 6359 ACGGTTTATTTGAACCAGGCATCCAACATGCTAT-TGATATCGTACATTCTTTTGGTGGA 6417 Query 159631 CAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGAC 159690 || || ||| | |||||||| ||| | ||||| ||||| || ||| | ||| | || Sbjct 6418 CAAGTCTATTTGGATGGTGCTAATATGAATGCGCAGGTTGGGCTAACTTCACCCGGAGAT 6477 Query 159691 TATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGT 159750 |||||||||||| || || | || |||||||||||||||| ||||| ||||| ||| Sbjct 6478 CTTGGTGCAGATGTTTGCCACTTGAATTTACATAAGACATTCTCCATTCCTCATGGTGGT 6537 Query 159751 GGAGGTCCTGGCGTAGGTCCTATT 159774 || ||||| | | || ||| ||| Sbjct 6538 GGTGGTCCAGCTGGAGCTCCCATT 6561 >seq19 Length=221039 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||| ||| |||| ||||| || || |||||||||||||| || || || | Sbjct 173444 CAAAGGTTCGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTCGCCGTTATT 173385 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 || || || ||||| || |||||||||||||| ||| || || || |||| Sbjct 173384 GATAAACTGAACAGAAAAATTCCTGGCAGAATTGTTGGTATCTCCAAGGACCGCCTAGGT 173325 Query 158563 AATAAAG-CATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGC 158621 ||| | | ||| | ||||| |||| |||||||| ||||| || | | | || ||||| Sbjct 173324 AATCCTGCCCTAC-GTTTAGCTTTACAAACTAGAGAACAGCACATTAAACGTGATAAAGC 173266 Query 158622 AACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 ||| ||||| ||||| || ||||| || |||||||| Sbjct 173265 AACTTCAAACATTTGCACCGCTCAAGCCCTTTTGGCTAAT 173226 Score = 102 bits (112), Expect = 1e-16 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 157880 TTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTG 157939 |||| ||| | |||||||| || || || || ||||| || || ||||| | | | Sbjct 174028 TTATTGGTAAGGGATACTACGGCACGATTTTGCCGCCAGTTATTCAAAGAAACCTATTGG 173969 Query 157940 AGAATCCTAGT-TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 | || || || |||||||| ||||| ||||| || || |||| ||||||||||| ||| Sbjct 173968 A-AAGCCCAGAATGGTACACTTCTTATACTCCATACCAGCCTGAAATATCTCAGGGTAGA 173910 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 |||||||| ||| | || | |||||| | | | || | || || | || | ||| Sbjct 173909 TTGGAAGCATTACTAAACTTCCAAACAGTAGTTTCCGATTTGACTGGTTTGCCTGTGGCA 173850 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAAT 158118 ||||| || | || ||||||| || || || | ||||| ||||| | ||| |||| Sbjct 173849 AACGCCTCATTGTTGGATGAAGGTACCGCGGCTGGTGAAGCTATGCTACTGTCATTTAAT 173790 Query 158119 TCTACAAGAGATAAGAAG 158136 | | ||| | || ||| Sbjct 173789 ATTTCCAGAAAGAAAAAG 173772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587981427725120