Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq6 159 6e-34 seq9491 87.8 3e-12 seq2 84.2 4e-11 >seq6 Length=371824 Score = 159 bits (176), Expect = 6e-34 Identities = 283/406 (70%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||||||||| | | | | |||| |||||||| ||| || | || |||||| Sbjct 99390 CCCTTGACGCAGAGGAGCGTCGTGAGCCGGGCGACGACCTCGACGAGGTCGGACTGGGC- 99332 Query 168333 GCCATGACGAGTTCGATCGG----CTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTC 168388 || ||||| ||| ||| |||||| || ||| ||||||||| ||| || | Sbjct 99331 GCG--GACGACCTCG-TCGAGGTCCTTGTAGGCGGCCGGGATCTCGTCGAGCACCCCGGC 99275 Query 168389 GTCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTT 168448 ||||||||||||||| ||||| |||| || || | ||||| || | || | ||| Sbjct 99274 GTCCTTGCGGCACTCCACGCCGGTCGTCTGGGCGGCGAGGTCGTCGAGCGTGAAGGTCTT 99215 Query 168449 CTTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTG-GCTGCACGAGCAGAAGGCGT 168507 ||||||| || ||||||||| ||||| || ||||| | || ||| ||| | | | Sbjct 99214 CTTCGCCTTCGTGCGCGACATGCGACGGCCCGCACCGTGCGACGC-CGACCAGTACGACT 99156 Query 168508 CAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGC 168567 | | || || |||||||||||| |||| || |||||| || ||||| |||| | Sbjct 99155 CCGGGTTCCCGAGCCCGCGCACGATGTACGAGCCGGTGCCCATGGACCCCGGGATGAGCC 99096 Query 168568 CGAGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGA 168627 |||| ||| ||||| ||| | |||||||||||||||||||| || |||| |||| Sbjct 99095 CGAGGTCGCCCTTCCCGGCCCGGATCGCGCCCTTGCGGGTCACGACGAGCTCCTGGCCGT 99036 Query 168628 AGTGGCGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTC 168673 | | | || ||||||||||||||| |||||| || || Sbjct 99035 CGACGTGCTCGACCGCGACGTAGTTGTGGTGGACGTTCACGGCCTC 98990 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139510 CGTGGCGTTGCCCTTGACGAGCAGCCCCAGGGCCTT-ACGCAGGTCCCAGCCATTCAGGT 139568 ||| ||||| || |||||||||| || |||||| ||| |||||||| || || | || Sbjct 230665 CGTCGCGTTCCCGCGCACGAGCAGCCGCACGGCCTTGACG-AGGTCCCACCCGTTGACGT 230607 Query 139569 CCCAGACACCTTCAATCGGACGCTCGATCACGTCGCGCGGCGTCGTCAGCCCCAGATATT 139628 || || | || | ||| ||||| ||||||||| ||| | | | || || | Sbjct 230606 CCAGCACCGCGTCGAGCGGCGTCTCGACGACGTCGCGCCGCGGCCAGGGGTCGAGGTAGT 230547 Query 139629 GCGAGAGCGGGCGAACGTAGAAGAACCGGACGTCGTTGTCGCTATCCGGCGACGGGAAGC 139688 | |||||| ||||| | ||| ||| ||||| ||| |||||||||||||| | Sbjct 230546 CGGCCTCCGGGCGCACGTACACGAAGCGGCAGTCGTAGTCCGAGTCCGGCGACGGGAACC 230487 Query 139689 CCCAGGCGCGCGAGCCGCTCTCCACCGCGA 139718 ||||||| || ||||||||||||||||| Sbjct 230486 CCCAGGCCCGGCTGCCGCTCTCCACCGCGA 230457 Score = 89.7 bits (98), Expect = 9e-13 Identities = 138/194 (71%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 169217 GTTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGAT 169276 || ||| ||||| | | || || || | ||||| || | ||||| ||||| ||||| Sbjct 98461 GTCGTCGGGCAGGTCCTCCGCCGTGAGGGACGTGCGGACGCCGATCATCCCGCACCCGAT 98402 Query 169277 GTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGC 169336 |||||||||||| |||| || ||| || || ||| ||| ||||| || |||| Sbjct 98401 GTCGACGCCGACGGCGTTGGGCGACACGGCGTCGCGCATCGCGATGACCGAGCCGACGGT 98342 Query 169337 TGCGCCGTACCCGGCGTGGACGTCGGGCATCAC-CGCGACGTGCTTGAACACGAACGGCA 169395 ||||| | || ||||||||||||||| || ||| ||| || | || |||||| Sbjct 98341 CGCGCCCTTGCCCAGGTGGACGTCGGGCATGACGCGC-ACGCCCTCG---ACCCACGGCA 98286 Query 169396 GCCCGGCGACGTTG 169409 || |||||| |||| Sbjct 98285 GCGCGGCGATGTTG 98272 >seq9491 Length=867449 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 61664 GTGTGGCGCAGTTTGGTAGCGCGCTT-GCTCGGGATGCAAGAGGTCGCAGGTTCAAATCC 61722 ||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| Sbjct 798024 GTGTGGCGCAGCTTGGTAGCGCGCTTCGTTCGGGACG-AAGAGGTCGCAGGTTCAAATCC 797966 Query 61723 TGCTACACTGACCAG 61737 || || | |||||| Sbjct 797965 TGTCACCCCGACCAG 797951 >seq2 Length=464139 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || |||||||||||||| |||||||||| | ||||||||||| | |||||| |||||| Sbjct 264227 GACGCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGCAGGTTCA 264286 Query 133020 AATCCCTCCCCCGC 133033 ||||| ||||||| Sbjct 264287 AATCCTGCCCCCGC 264300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895660117316640