Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq62 154 2e-32 seq19 129 7e-25 >seq62 Length=101292 Score = 154 bits (170), Expect = 2e-32 Identities = 339/504 (67%), Gaps = 12/504 (2%) Strand=Plus/Minus Query 138188 AATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATT 138247 ||| ||| || | | ||||| ||||| ||||| ||||| ||||||||||||||||||| Sbjct 6561 AATGGGAGCTCCAGCTGGACCACCACCACCATGAGGAATGGAGAATGTCTTATGTAAATT 6502 Query 138248 TAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAG 138307 | || || |||||||||||| || | ||| | ||| || ||||| ||||| | Sbjct 6501 CAAGTGGCAAACATCTGCACCAAGATCTCCGGGTGAAGTTAGCCCAACCTGCGCATTCAT 6442 Query 138308 ATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC-TGTC 138366 ||| |||||||| | ||| || || |||||| ||| ||||| | | ||| | ||| Sbjct 6441 ATTAGCACCATCCAAATAGACTTGTCCACCAAAAGAATGTACGATATCA-ATAGCATGTT 6383 Query 138367 TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGTT 138426 |||| || |||||||| ||| | ||| || ||||| || ||||| | | |||| Sbjct 6382 GGATGCCTGGTTCAAATAAACCGTAAGTAGAAGGATAGGTGATCATTACGGCGGCTAGTT 6323 Query 138427 C----AAATG-TATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATC 138481 | |||| | |||| || || |||| || || | |||| |||||| Sbjct 6322 CTTTAGAATGTTGTTCA-----GCCTTATTCTTTAAGTCAACCAGATCTAATGAGCCATC 6268 Query 138482 ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGT 138541 | ||| |||||| |||||||| | || ||||| | ||| ||| ||||| || Sbjct 6267 CTGCAAACAGTTGACAGGAACAACTTTTAAACCCGCCATAGCGGCAGAAGCCGGATTTGT 6208 Query 138542 TCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTGATG 138601 ||||| || || | || || | ||| || || | | || || ||| | || | Sbjct 6207 ACCATGAGCGGATACAGGGATTAAACACACGTTACGATGATTTTCACCTTTGCTTTCCAG 6148 Query 138602 ATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGTAA 138661 || | | |||| || ||| || | ||| ||||| || | |||| || |||||||| Sbjct 6147 GTAGGATCTGATTACTCTCAGACCAGTATATTCACCTTGAGCACCTGAATTTGGTTGTAA 6088 Query 138662 TGATATAGAATCAAAACCTGTGAT 138685 || ||| ||| |||||||| || Sbjct 6087 AGAAATACCATCGAAACCTGTAAT 6064 >seq19 Length=221039 Score = 129 bits (142), Expect = 7e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139311 AGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTA 139370 || ||||| || ||||| ||||| |||||||| || | | |||| ||||| |||||| Sbjct 173236 AGGGCTTGAGCGGTGCAAATGTTTGAAGTTGCTTTATCACGTTTAATGTGCTGTTCTCTA 173295 Query 139371 GTTTGTAGTGCTAATCTGTA-TGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAAT 139429 ||||||| ||||| | ||| |||||||| ||| || |||| || ||| ||||| Sbjct 173296 GTTTGTAAAGCTAAAC-GTAGGGCAGGATTACCTAGGCGGTCCTTGGAGATACCAACAAT 173354 Query 139430 TCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACC 139489 ||||||||| || ||||| || || || | || || || |||||||||||||| Sbjct 173355 TCTGCCAGGAATTTTTCTGTTCAGTTTATCAATAACGGCGAAAAAGGCAGCATGAGGACC 173414 Query 139490 TCCGTATCCCATAGGAATACCAAACCTTTG 139519 || || ||||| |||| ||| |||||||| Sbjct 173415 ACCATAACCCATTGGAACACCGAACCTTTG 173444 Score = 107 bits (118), Expect = 2e-18 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 139826 CTTCTTATCTCTTGTAGAATTATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTC 139885 ||| || | ||| | | |||| ||| | ||||| || || | || || || |||| Sbjct 173772 CTTTTTCTTTCTGGAAATATTAAATGACAGTAGCATAGCTTCACCAGCCGCGGTACCTTC 173831 Query 139886 ATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTA 139945 ||| || | || |||||||| | || || || || | || | | | |||||| | Sbjct 173832 ATCCAACAATGAGGCGTTTGCCACAGGCAAACCAGTCAAATCGGAAACTACTGTTTGGAA 173891 Query 139946 ATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGT 140005 || | ||| ||||||||||| ||||||||||| |||| || || ||||| ||||| || Sbjct 173892 GTTTAGTAATGCTTCCAATCTACCCTGAGATATTTCAGGCTGGTATGGAGTATAAGAAGT 173951 Query 140006 GTACCA-ACTAGGATTCTCAAGAACGTTTCGCTGTATGACTGGGGGTGTAATGGTTCCAT 140064 |||||| || || || || | | ||||| || || ||||| || ||| || || | Sbjct 173952 GTACCATTCTGGGCTT-TCCAATAGGTTTCTTTGAATAACTGGCGGCAAAATCGTGCCGT 174010 Query 140065 AGTATCCTTGACCTATAA 140082 ||||||| | ||| |||| Sbjct 174011 AGTATCCCTTACCAATAA 174028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578929701839840