Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq6 105 3e-18 seq2 87.8 7e-13 >seq6 Length=371824 Score = 105 bits (116), Expect = 3e-18 Identities = 237/347 (68%), Gaps = 23/347 (7%) Strand=Plus/Plus Query 54173 CGAGATCGC---CGGCGAACGCGTCAACGCGCACCACAACTACACCACCCAGGAGCACAT 54229 ||||||||| || ||| ||| |||| |||||||||||| | | |||||| | Sbjct 98974 CGAGATCGCGTTCGACGAGGCCGTGAACGTCCACCACAACTACGTCGCGGTCGAGCACGT 99033 Query 54230 CAACGGT---GAGCTGGTGTGGGTGACCCGCAAGGGCGCCATCAGCGC--GCAACTCGGT 54284 | |||| ||||| || ||||||||||||||||| ||| | || | || || Sbjct 99034 CGACGGCCAGGAGCTCGTC---GTGACCCGCAAGGGCGCGATCCGGGCCGGGAAG--GGC 99088 Query 54285 GAGCGTGGCCTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGC 54344 || | || |||||||| || ||||||||| | ||| ||| |||| ||| || Sbjct 99089 GACCTCGGGCTCATCCCGGGGTCCATGGGCACCGGCTCGTACATCGTGCGCGGGCTCGGG 99148 Query 54345 AACCCCGAAGGG--CTGCATTCCGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCA 54402 ||||| || | ||| || ||| ||||||| || ||||| ||| || ||||| | Sbjct 99149 AACCCGGAGTCGTACTGG--TCGGCGTCGCACGGTGCGGGCCGTCGCATGTCGCGCACGA 99206 Query 54403 AGGCACGCAAGCTGTTCACCGTCGACGACCTCGCAGACCGTATGCGCGGCATCGAATACC 54462 |||| ||| ||||| ||||||||||||| | || | | |||| | || | || Sbjct 99207 AGGCGAAGAAGACCTTCACGCTCGACGACCTCGCCGCCCAGACGACCGGCGTGGAGTGCC 99266 Query 54463 GGCACGGTGAGGCGTGGG---TCGACGAGATTCCCGACGCCTACAAG 54506 ||| | || || ||| |||||||||| || | |||||||||| Sbjct 99267 -GCAAG--GACGCCGGGGTGCTCGACGAGATCCCGGCCGCCTACAAG 99310 >seq2 Length=464139 Score = 87.8 bits (96), Expect = 7e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 || || |||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 48405 GTGGCGCAATTGGTAGCGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 48462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200367218087064