Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016- 01-13] 387 sequences; 14,343,437 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq30 127 3e-24 seq12 114 2e-20 seq21 113 7e-20 seq206 87.8 3e-12 >seq30 Length=183202 Score = 127 bits (140), Expect = 3e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | || || ||||| || ||| |||| ||||| | ||| || ||| ||| Sbjct 32199 AAGACTTTGACTGGTAAAACCATCACTCTAGAAGTTGAATCTTCTGACACCATTGACAAT 32258 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | ||| || |||||||| ||||||||||| |||||||| |||||||| | || ||| Sbjct 32259 GTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 32318 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || || ||||| || || || |||| || || || || |||||||| ||||| Sbjct 32319 GCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCC 32378 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || |||||||||| Sbjct 32379 ACTTTACATTTAGTCTTGAGATTGAGAGGTGGTAT 32413 >seq12 Length=130387 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 11882 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 11941 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 11942 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 12001 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 12002 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 12061 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 12062 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 12102 >seq21 Length=122314 Score = 113 bits (124), Expect = 7e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | || || || || || ||| | || ||||| | ||| || ||| ||| Sbjct 94203 AAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACAAT 94144 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | || || || ||||| || |||||||| ||||||||||||||||| | || ||| Sbjct 94143 GTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGATCAACAAAGATTGATCTTT 94084 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || || ||||| || || || |||| || || || || || ||||| ||||| Sbjct 94083 GCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAATCC 94024 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || | ||| |||||||||| Sbjct 94023 ACTTTACATTTGGTCTTGAGATTAAGAGGTGGTAT 93989 >seq206 Length=407341 Score = 87.8 bits (96), Expect = 3e-12 Identities = 232/352 (66%), Gaps = 2/352 (1%) Strand=Plus/Minus Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| ||||||| |||| || || || |||| |||| || |||| |||| ||| Sbjct 196832 ACATAAAATTGTGAAAAAATGTGGCATGGCGGTAAGGCCATCTTGTCAAAATCTGCAGGG 196773 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || | | || || ||||| | ||| || | |||| ||| | ||||| Sbjct 196772 TTCCAAGCGCTCATGATGATTCTTCTATCATAAGGGTTTGTCTTTAATTTGTGTATAACC 196713 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAATATATTTAGC 205739 || | | ||||| | ||||| ||||| | || || || | ||||| || Sbjct 196712 TGCTTCAGCTGATCGATACCTTGTCCGGTATAGTCATCGTCGCAGGTCT-TGTATTTGGC 196654 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 ||||||||| | |||||| || |||||||| ||||| | ||| ||| |||| ||||| | Sbjct 196653 ACCAAAATGTCTCCATTGGAACCCATAAACAGGACCCAGATCCCCTACTTTCCTATCCAT 196594 Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttt 205859 | || || | | ||||| |||||||| | |||||||| | |||| Sbjct 196593 GAGTCCCATCTTGTCCAAATATTCACGAGATCCATTACCGTCCCAAATTCTAACACCTTG 196534 Query 205860 attttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCT 205911 | || ||||| | || || | |||| || |||||||| ||||||| Sbjct 196533 TTCAGATAAGATATTAGCATCTGTAGCACCAGCTACAAACCATAGTAATTCT 196482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755452345481600