Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016-
01-13] 387 sequences; 14,343,437 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq12 102 6e-17
seq82 93.3 3e-14
seq97 91.5 1e-13
seq196 89.7 4e-13
seq30 87.8 1e-12
>seq12
Length=130387
Score = 102 bits (112), Expect = 6e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| ||||||||||||||||||||||| | || ||| ||| ||||||||||| || ||
Sbjct 12069 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 12010
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| |||| | ||||||||| || || | |||||||| || ||| | | ||||
Sbjct 12009 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 11950
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||||| | || ||| | |||||| | || || ||||| ||
Sbjct 11949 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 11890
Query 18309 TTTACAAAA 18317
|| ||||||
Sbjct 11889 TTGACAAAA 11881
>seq82
Length=49194
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179
|||| ||||| ||||| ||||| || |||||||| | || ||| ||| |||||||||
Sbjct 41495 ATGTAAAGTG--GATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTACCGTCTTCCAAT 41438
Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239
|| || || ||| |||| | ||||||||| || || | |||||||| || |||
Sbjct 41437 TGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATC 41378
Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299
| | |||||| | ||| |||||| | || ||| | |||||| | || ||
Sbjct 41377 TTTGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCA 41318
Query 18300 GTCAATGTTTTTACAAAA 18317
||||| ||||| ||||||
Sbjct 41317 GTCAAAGTTTTGACAAAA 41300
>seq97
Length=405077
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| ||
Sbjct 387228 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 387169
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
| ||| |||| ||| || || ||| | || ||||||||||| || || | ||||||
Sbjct 387168 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 387109
Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287
|| || ||| | |||||| | | | |||||| | |||| || | |||
Sbjct 387108 TTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCTAAGGTT 387049
Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || || |||| ||| || || || ||||||||
Sbjct 387048 ATGGTCTTACCAGTCAGTGTCTTGACGAAGATTTGCAT 387011
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| ||
Sbjct 386772 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 386713
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
| ||| |||| ||| || || ||| | || ||||||||||| || || | ||||||
Sbjct 386712 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 386653
Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287
|| || ||| | |||||| | | | ||||| || |||| || | ||
Sbjct 386652 TTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCCAAAGTA 386593
Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || || ||||| || || || ||||| |||||
Sbjct 386592 ATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 386555
>seq196
Length=158208
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || || || ||||| ||||||||||| | || ||| | | ||||||
Sbjct 147437 ACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCC 147496
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || || ||| |||| | ||||||||| || || | |||||||| || |
Sbjct 147497 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGA 147556
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|| | |||||| | ||| |||||| | || ||||| ||| || | ||
Sbjct 147557 ATCTTAGACTTGACATTGTCAATAGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTA 147616
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| || || || || ||||||||||| ||
Sbjct 147617 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 147648
>seq30
Length=183202
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/92 (82%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179
|||| ||||| ||||| ||||||||||||||||||| || ||| ||| |||||||||
Sbjct 32387 ATGTAAAGTG--GATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAAT 32330
Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211
|| || || ||| |||| | ||||||||| ||
Sbjct 32329 TGCTTACCAGCAAAGATCAATCTTTGTTGGTC 32298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379342210800315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |