Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016- 01-13] 387 sequences; 14,343,437 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12 102 6e-17 seq82 93.3 3e-14 seq97 91.5 1e-13 seq196 89.7 4e-13 seq30 87.8 1e-12 >seq12 Length=130387 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||||||||| | || ||| ||| ||||||||||| || || Sbjct 12069 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 12010 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | ||||||||| || || | |||||||| || ||| | | |||| Sbjct 12009 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 11950 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | |||||| | || || ||||| || Sbjct 11949 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 11890 Query 18309 TTTACAAAA 18317 || |||||| Sbjct 11889 TTGACAAAA 11881 >seq82 Length=49194 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| ||||| || |||||||| | || ||| ||| ||||||||| Sbjct 41495 ATGTAAAGTG--GATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTACCGTCTTCCAAT 41438 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 || || || ||| |||| | ||||||||| || || | |||||||| || ||| Sbjct 41437 TGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATC 41378 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | | |||||| | ||| |||||| | || ||| | |||||| | || || Sbjct 41377 TTTGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCA 41318 Query 18300 GTCAATGTTTTTACAAAA 18317 ||||| ||||| |||||| Sbjct 41317 GTCAAAGTTTTGACAAAA 41300 >seq97 Length=405077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| || Sbjct 387228 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 387169 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||| ||| || || ||| | || ||||||||||| || || | |||||| Sbjct 387168 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 387109 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | |||||| | | | |||||| | |||| || | ||| Sbjct 387108 TTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCTAAGGTT 387049 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| ||| || || || |||||||| Sbjct 387048 ATGGTCTTACCAGTCAGTGTCTTGACGAAGATTTGCAT 387011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| |||||| || || || ||||| ||||| ||||| | || ||| || Sbjct 386772 AGTCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAGTCTGACAAAGTTCTA 386713 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||| ||| || || ||| | || ||||||||||| || || | |||||| Sbjct 386712 CCATCCTCCAGTTGCTTACCAGCAAAAATCAGTCTTTGTTGGTCTGGAGGAATACCTTCC 386653 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | |||||| | | | ||||| || |||| || | || Sbjct 386652 TTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCCAAAGTA 386593 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| || || || ||||| ||||| Sbjct 386592 ATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 386555 >seq196 Length=158208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || || || ||||| ||||||||||| | || ||| | | |||||| Sbjct 147437 ACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCC 147496 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || | Sbjct 147497 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGA 147556 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| | || ||||| ||| || | || Sbjct 147557 ATCTTAGACTTGACATTGTCAATAGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTA 147616 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 147617 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 147648 >seq30 Length=183202 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| ||||||||||||||||||| || ||| ||| ||||||||| Sbjct 32387 ATGTAAAGTG--GATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAAT 32330 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || || || ||| |||| | ||||||||| || Sbjct 32329 TGCTTACCAGCAAAGATCAATCTTTGTTGGTC 32298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342210800315