Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016- 01-13] 387 sequences; 14,343,437 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq22 107 2e-18 >seq4 Length=240824 Score = 170 bits (188), Expect = 2e-37 Identities = 560/857 (65%), Gaps = 39/857 (5%) Strand=Plus/Plus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| ||||| || || |||||| ||||| || ||||| || || Sbjct 6634 TTGGACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTA 6693 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTT 12960 || | || || || |||||||| |||||||| || |||| ||| | |||||||| || Sbjct 6694 CCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTT-CGACCTTGTAGTATTTCTT 6752 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || || | | |||| |||||| || || ||||| | ||| || |||||||| || Sbjct 6753 GTTACCGAAAGCAACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTC 6812 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt---ttttttCTAT 13077 | |||||| |||| || || || | || || || |||| ||| ||| || Sbjct 6813 AGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC---AAGAAGTATCTTTGTTCAAT 6869 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----A 13133 || || || ||| | || || | | | | || | || || |||| | | Sbjct 6870 TTCCACAGCCTCGGTGACAATTTTT-TCA--ACAATGGCTGGGTCTGG-TTTGTTCTTCA 6925 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCT 13193 ||| |||| || |||||||| || |||||| ||||| ||||||| || | | Sbjct 6926 AATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATT 6985 Query 13194 CGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAA 13253 |||| ||||| |||| ||| ||||| | |||| ||||| | ||| || || | |||| Sbjct 6986 CGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAA 7045 Query 13254 ACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG 13313 | ||||| || ||||| | ||||||| | ||||| || | | ||||||||| || Sbjct 7046 AGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACA 7105 Query 13314 TACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 | | ||| | |||| || ||||| | || || | || | ||| Sbjct 7106 -AGGCGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTC----ACCGATTTC 7160 Query 13373 ----ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGT 13428 || | | || || || || || | | |||| ||| ||| || || || Sbjct 7161 TGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAGGT 7220 Query 13429 ATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA 13488 ||| ||||| ||| || |||| || ||||||||||| ||| ||||||||||| || Sbjct 7221 ATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTA 7280 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 |||| | ||||||| | || ||||||| | | || |||| | |||||||| || Sbjct 7281 GAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATT 7340 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAG---TATGTGCTTAATAAAt---ttttt 13602 ||| || |||||| ||| || ||||| ||||| | || | | |||| | || Sbjct 7341 AACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTT 7400 Query 13603 ttCGTT--TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 ||||| ||||| || ||| || | | ||| || || ||||| | || ||| Sbjct 7401 CTCGTTCATTCTG-----TTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCA 7455 Query 13661 ACGGTCCAAAAAGAAGC 13677 ||||||| |||||||| Sbjct 7456 GCGGTCCAGAAAGAAGC 7472 >seq22 Length=276364 Score = 107 bits (118), Expect = 2e-18 Identities = 534/837 (64%), Gaps = 35/837 (4%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||| ||||| ||||| || ||||| || || || | || ||||| ||| Sbjct 269967 TTTTGGTAGTCGGAGACTCTCTTTTCGAAGAAGTTGGTCTTACCGGCCAAGGAAATGTTT 269908 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| |||||||| || || | ||| | ||||| || || || || | | || Sbjct 269907 TCCATGAAATCGAAGGGGTTGT-CGACCTTGTAGTACTTCTTGTTACCGAAGGCGACCAA 269849 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 || |||||| || || ||||| | |||||| ||||| || || ||||| |||| || Sbjct 269848 CAGTCTGTCTGCGACGAACTCGACGTACTGGTTCATCAAGTCGGCATTCATACCTAGCAA 269789 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || |||| || ||| || | ||| ||| || || || || ||| | || || Sbjct 269788 GGCGACTGGCAAGGCGTCTAGGAAGTATCTTTGTTCGATCTCGACGGCCTCGGTGACGAT 269729 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATT--TGAT-AGATGCTTAAACATCATACATGC 13155 | ||| ||| | || || || | | | ||| |||| || ||| || Sbjct 269728 TT-TCTCG--ACGATGGCTGGGTCCGGCTTGTTCTTCAAATGGGCGAACAACAAACAGGC 269672 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| || |||||| ||||| ||||| | || | |||||| || || || | || || Sbjct 269671 AAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCAACCCGGG 269612 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| | |||| || || | ||| || || | || || || || || || || | || Sbjct 269611 CATCATACCTCTCTTCTTCAACCAGAAGATGGAGGCGAAGGACCCGGAGAAGAAAACACC 269552 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCC 13334 ||| | | || || || | | |||||||| || | | | ||| |||| Sbjct 269551 TTCGATGGACGCGAAGGCGACTAGTCTTTCACCGAACAG-CGCGTCTGCGTCTTGGATCC 269493 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAG--TTC----ATATTTTCTATTGCGT 13388 | | |||||| | || || | |||| ||| || | || || |||| Sbjct 269492 ATCTAAGGGCCCATTCGGCCTTCT------CGCAAATTTCTGGGATGGTGTCGATGGCGT 269439 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | || || | | ||||||| || || || ||||| ||||| ||| || Sbjct 269438 TGAACAAGAATTCACTTTCCTTTGGATCCTTGATGTAGGTATCGATCAACAAGGAGTAGG 269379 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| |||||||| ||||| || || ||||||||||| || |||| | || || | | Sbjct 269378 TTTCGGAATGAATGTTTTCGATAGCGATTTGGAAACCGTAGAAACTCTTGGCTTCCGGGA 269319 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||| || |||| | | || | || | ||||||||||| || || ||||| || | Sbjct 269318 TCTGGACCTCGGTGGAGAAATTCTCGACCAAGTTTTCGTTGACAATACCGTCGGAGGCGG 269259 Query 13569 CaaaaaaaGCAAGTA----TGTGCTTAATAAAtttt--ttttCGTT--TTCTGACAACTT 13620 | || || ||||| | || | | || || ||| |||||||| ||||| || Sbjct 269258 CGAAGAAGGCAAGGACTCTTGAGATGAAGAACCTTTCGTTTTCGTTCATTCTG-----TT 269204 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 ||| || | | ||| || || ||||| | ||||| | ||||| ||||| || Sbjct 269203 GTTCCAGTCATGGATATCCTTGGACAAATCGATTTCCTCGGCAGTCCAGAAAGAGGC 269147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980367244574