Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016- 01-13] 387 sequences; 14,343,437 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq206 98.7 1e-15 seq176 87.8 2e-12 >seq206 Length=407341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 363/567 (64%), Gaps = 35/567 (6%) Strand=Plus/Minus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758 ||| |||||||| || ||| | ||| |||||||| || ||||| ||| | |||| || Sbjct 197166 TGGGTGAGGATTGTAGTCTTCAATTTCGAAATCTTCTAACTTAAAGTCA--TCAATT-TC 197110 Query 6759 AGACttttt--ttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTTAA--TTGTT 6814 | | | ||||||| || | || ||| | | | | |||| | || ||||| Sbjct 197109 TGTAATGTCCCTTTTAATCTTTAATTTGGGGAATGGTCT-TGGATCTCTTGAAATTTGTT 197051 Query 6815 CTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 | || | || | |||||||| ||| | ||| ||||| || | |||||||| || | Sbjct 197050 CATTCAAGGCATCAATATGATCCTTATACACATGTGCATCCCCCAAAGTATGAATGAACT 196991 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 |||| |||| ||||||||| ||| ||| || | || | || ||||| || || | Sbjct 196990 CACCCGGTTCCATATCAACGACTTTAGCTATCATTCTAGTCAGTAGCGCATATGAGGCGA 196931 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAA------CA-------- 6980 |||||| || ||||| | |||||||| || | ||| || || Sbjct 196930 TATTAAATGGCACACCGAGCCCCATATCACAGGAACGTTGGTACAGCAAGCACGAAAGGC 196871 Query 6981 ----TTGACAAGATAAAATATTGTCTATAG---------CATAAAATTGACACAATACAT 7027 || || | | | | ||| | | |||||||||| | || | | Sbjct 196870 GAGGTTTACCACTTCCACTTCCCTCTTTGGGGAAACTGACATAAAATTGTGAAAAAATGT 196811 Query 7028 GACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATAC 7087 | ||||| ||||| | || || | ||| | || |||||||| |||| | || | Sbjct 196810 GGCATGGCGGTAAGGCCATCTTGTCAAAATCTGCAGGGTTCCAAGCGCTCATGATGATTC 196751 Query 7088 GTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCT 7147 |||||||| || ||||| |||||||| ||||| | | ||||| ||||| | Sbjct 196750 TTCTATCATAAGGGTTTGTCTTTAATTTGTGTATAACCTGCTTCAGCTGATCGATACCTT 196691 Query 7148 GACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACC 7207 | || ||| | | | || | | || || || ||||||||||||||||| |||| Sbjct 196690 GTCCGGTATAGTCATCGTCGCAGGTCTTGTATTTGGCACCAAAATGTCTCCATTGGAACC 196631 Query 7208 CATAAATAGGACCTAAATCACCTTCTT 7234 |||||| |||||| | ||| ||| ||| Sbjct 196630 CATAAACAGGACCCAGATCCCCTACTT 196604 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| |||| ||||| || || |||||| | || |||||| || || |||||| | Sbjct 56416 CCTCAAATCGGTGACAAATTCGCTTCTCGTCATGGTCAAAAGGGTACTATTGGTATCACA 56475 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAAC 19477 |||||| |||||||||||| ||||| ||| ||||| || || ||| | ||||| || Sbjct 56476 TATCGTAGAGAAGATATGCCATTTACAGCAGAAGGTATCGTTCCAGATTTAATTATCAAT 56535 Query 19478 CCACATGCTTTTCCAAGTCGAATGAC 19503 || |||||| ||||| ||| ||||| Sbjct 56536 CCTCATGCTATTCCATCTCGTATGAC 56561 >seq176 Length=107501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 252/385 (65%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 || |||||||| ||||||||| | || | || ||||| ||| ||||||| || | Sbjct 57768 AAGATTGTTAACGGTCCTGAAGTTTTAAGTAAGTATGTTGGTTCCTCAGAAGAAAACATC 57827 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGA--AAGCAGGTTTAGCTAGTAAAT 164722 | || || || | || || |||| |||| | ||| ||| || | | | | Sbjct 57828 CGTAATTTATTCAAAGACGCAGAAGCAGAATACAAGGCCAAGGGGGATGAATC--TTCCT 57885 Query 164723 TACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAA---------ACGTGGTG 164773 ||||| | || |||||||||| | ||| || ||| ||| | | | |||| Sbjct 57886 TACATATCATCATTTTTGATGAACTGGATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTG 57945 Query 164774 ATAATATTATTCATGATG-CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAG 164830 || || | | | || || || |||||||| ||||| ||||||| || ||||| | Sbjct 57946 ATGGTACTGGTGTAGGTGACAATGTAGTTAATCAATTGCTGGCTAAAATGGACGGTGTTG 58005 Query 164831 AATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATG 164890 | | |||||||| || | | |||||||||||||| ||||| || ||| || Sbjct 58006 ATCAACTGAATAATATATTGGTCATTGGTATGACCAACCGTAAAGATTTGATCGATATTG 58065 Query 164891 CTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAG 164950 || | ||||| || ||| |||| ||| | | | ||||| ||||| ||| || ||| Sbjct 58066 CTCTTTTACGTCCAGGTAGATTCGAAGTTCAGGTTGAAATTCATTTACCGGACGAAAAAG 58125 Query 164951 GACGCCTTCAAATTTTAAAAGTTCA 164975 | | || || ||||| || |||| Sbjct 58126 GTAGACTGCAGATTTTTGAAATTCA 58150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869117469200