Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016- 01-13] 387 sequences; 14,343,437 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq214 104 4e-17 seq22 96.9 6e-15 >seq214 Length=210230 Score = 104 bits (114), Expect = 4e-17 Identities = 292/443 (66%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 203880 TTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAG 203939 |||||| ||| ||||| ||||||||||| ||||||| ||| ||||| | ||||| | Sbjct 6303 TTCTCAAATAATACATACCGGTCTTTAGACCCTTCTTCCAGCCGTAGAAATGCATACTTG 6362 Query 203940 ACAGTTTGCTCA-CGTTGGGGTCGGCCATGTGAAT--GTTCAGAGACTGGCTTTGGTCGA 203996 || || | || ||||||| || | |||| |||| ||| || |||||||| Sbjct 6363 TTAGCTTACCCATAGTTGGGGCACGCAA---GAATAAATTCAAAGAGTGAGATTGGTCGA 6419 Query 203997 TGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCG 204056 || || || || || || ||||| || || || ||||| || ||||| ||||| || | Sbjct 6420 TGTAAATGGCACGGTCGGCTGCCATGTTAATGATTGTCTTTTGTGAAATTTCCCAAACAG 6479 Query 204057 TCTTGAACACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTG 204115 | || ||| ||| | | ||| ||||||| || | | || || || || || Sbjct 6480 TTTTATACAAATCTTTCAATTCTTGTGGCACAT-TTGGTAAACCTTGAATGGAACCATTT 6538 Query 204116 TCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGC 204175 | | || || | || | | || |||| || ||||| || || || ||| Sbjct 6539 TGTGTGATTAGATATTGCTTCATACCATCATCCCAAATACCCAAATCGACCAAATCACGC 6598 Query 204176 ACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTG 204235 | || || || |||| || ||||| || || || || || | || | ||| |||| Sbjct 6599 AACAAGTATGGATTGACGACTTGAAATTCACCAGATAGGACACGACGAGAATACATGTTG 6658 Query 204236 TTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGC 204295 || | ||||||||| |||||||| || || ||||||| ||| || || ||| Sbjct 6659 GAAGTAACTGGTTCGAAACACTCGTTGTAACCTAAGATCTGAGATGTGGATGCAGTAGGC 6718 Query 204296 ATGGGAGCCAGGAGCAGGGAGTT 204318 || || |||| | || ||||| Sbjct 6719 ATAGGTGCCATGGTCAAAGAGTT 6741 >seq22 Length=276364 Score = 96.9 bits (106), Expect = 6e-15 Identities = 312/482 (65%), Gaps = 2/482 (0%) Strand=Plus/Minus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||||||| ||||| || ||||| | |||| ||||||||||| | | | | Sbjct 269676 CAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCAAC 269617 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||| || || | | || | ||| || |||| || || | ||| || || Sbjct 269616 CCGGGCATCATACCTCTCTTCTTCAACCAGAAGATGGAGGCGAAGGACCCGGAGAAGAAA 269557 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 | || || | || ||| || || || || || ||||| || |||| | ||| ||| Sbjct 269556 ACACCTTCGATGGACGCGAAGGCGACTAGTCTTTCACCGAACAGCGCGTCTGCGTCTTGG 269497 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA 160162 |||| || ||||||||| ||||||| || || ||| |||| |||||| Sbjct 269496 ATCCATCTAAGGGCCCATTCGGCCTTCTCGCAAATTTCTGGGATGGTGTCGATGGCGTTG 269437 Query 160163 AACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATT 160222 ||||| || ||||| ||||||||| ||| | |||| | ||||| || Sbjct 269436 AACAAGAATTCACTTTCCTTTGGATCCTTGATGTAGGTATCGATCAACAAGGAGTAGGTT 269377 Query 160223 TCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC 160282 || | || | |||||||| || || || || ||||||| | || ||| | | Sbjct 269376 TCGGAATGAATGTTTTCGATAGCGATTTGGAAACCGTAGAAACTCTTGGCTTCCGGGATC 269317 Query 160283 TGCACCTCCTGTGTGAACCT-TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGC 160341 || ||||| | ||| | | |||| || || | || || | ||||||| ||| || Sbjct 269316 TGGACCTCGGTGGAGAAATTCTCGACCAAG-TTTTCGTTGACAATACCGTCGGAGGCGGC 269258 Query 160342 AAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCA 160401 ||||| || | || |||||||| || |||| || ||| | ||| || | ||| Sbjct 269257 GAAGAAGGCAAGGACTCTTGAGATGAAGAACCTTTCGTTTTCGTTCATTCTGTTGTTCCA 269198 Query 160402 GT 160403 || Sbjct 269197 GT 269196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151353436720