Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001515465.1_202016- 01-13] 387 sequences; 14,343,437 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq196 98.7 7e-16 seq97 87.8 1e-12 seq30 84.2 2e-11 >seq196 Length=158208 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || ||| | || || || |||||| |||| || ||| Sbjct 147648 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCT 147589 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | ||||| ||||| || || ||||| |||||| |||| | Sbjct 147588 TCAGACACTATTGACAAT--GTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTG 147531 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || || |||||||| |||| | | ||||| || | Sbjct 147530 ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACT 147471 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||||| || ||||||||| | ||| | || || Sbjct 147470 ACAACATCCAAAAGGAGTCCACTTTACACTTGGTTTTGAGATTGAGAGGTGG 147419 >seq97 Length=405077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 8/124 (6%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| ||| || || |||| |||||||| || ||||| |||| Sbjct 386876 GACAAGGAAGGTATTCCTCCGGATCAACAGAGGTTGATTTTTGCTGGTAAACAGCTGGAA 386935 Query 27943 GACG----AACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| ||||| |||| ||||||||||||||||| ||| |||| |||| ||||| Sbjct 386936 GACGGCAGAACGC----TGTCTGATTACAACATCCAAAAGGAGTCCACTCTGCACTTGGT 386991 Query 27999 TTTG 28002 ||| Sbjct 386992 CTTG 386995 >seq30 Length=183202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||| | || || ||||| || || |||||||| Sbjct 32277 GACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAA 32336 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||||||||| |||||||| ||||| || |||||| ||||| || ||| Sbjct 32337 GACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACATTTAGTCTTG 32396 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 32397 AGATTGAGAGGTGG 32410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860721552749