Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq77 168 5e-37 seq3 123 2e-23 >seq77 Length=84601 Score = 168 bits (186), Expect = 5e-37 Identities = 373/560 (67%), Gaps = 31/560 (6%) Strand=Plus/Minus Query 96996 AAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAAT 97055 || ||||||| | ||||| || || ||| ||| || | || ||| | | |||||||| Sbjct 56433 AATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGTGATTTGTTCTTTCAAGGCATCAAT 56374 Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 ||| | ||||| || ||||| || ||||| ||||| || || || || | | || Sbjct 56373 GTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCCATGTC 56314 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 || | || ||||| | ||| || | || ||| ||||||||||| || || || Sbjct 56313 GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAATGGTACTCC 56254 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAG-----------------C 97218 | ||||||||| || | ||| || || || ||||| | Sbjct 56253 CAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACCGGATCC 56194 Query 97219 TT-TCCATC---------ACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGC 97268 || ||| || || ||||| ||||| || | ||| || || ||||| || Sbjct 56193 TTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGCGGCAAAGC 56134 Query 97269 CATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTT 97328 |||||| || ||| ||||| |||| ||| | |||||||||||| || || Sbjct 56133 CATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTAGGGATT 56074 Query 97329 TGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTG 97388 ||| | || ||| ||| | ||| || |||||||||| |||| |||| ||| | || Sbjct 56073 TGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATAGTCGT- 56015 Query 97389 CTTAAGAC--CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCA 97446 | | || |||| |||| || ||||||||||||||||| ||||||||||| || || Sbjct 56014 CATCGCACGTCTTG-TATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGGGCCCC 55956 Query 97447 AGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTT 97506 || |||||| ||| ||||| ||| || | |||||||||||| | ||||||||| Sbjct 55955 AGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATCCATTA 55896 Query 97507 GCATCCCAAATGTGCACACC 97526 | |||||||| | ||||| Sbjct 55895 CCGTCCCAAATCTTAACACC 55876 >seq3 Length=317965 Score = 123 bits (136), Expect = 2e-23 Identities = 412/640 (64%), Gaps = 41/640 (6%) Strand=Plus/Plus Query 96912 CATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCATTTGCT---TTAAA 96968 ||||| || || |||| ||| || |||| ||| ||| | || | || ||||| Sbjct 210017 CATTTGGATTCTTGGGTGAGGATTGTAGTCTTC---AATTTCGAAATCTTCTAACTTAAA 210073 Query 96969 ATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCG 97028 |||||||| || ||| | || || ||||| | | ||||| || || ||| || Sbjct 210074 GTCATCAATTTCTGTAATGTCCCTTTTAATCTTTAATTTGGGGAATGGTCTTGGATCTCT 210133 Query 97029 CGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGT 97088 | || || || | | |||||||| |||| | ||| | || ||||| || ||||| Sbjct 210134 TGAAATTTGTTCATTCAAGGCATCAATATGATCCTTATACACATGTGCATCCCCCAAAGT 210193 Query 97089 GTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGA 97148 ||||| || || || || | | |||| ||| | || ||||| | ||| | ||| | Sbjct 210194 ATGAATGAACTCACCCGGTTCCATATCAACGACTTTAGCTATCATTCTAGTCAGTAGCGC 210253 Query 97149 ATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTG 97208 ||| || || ||||| ||||| || || ||||||||| || | ||| || | | Sbjct 210254 ATATGAGGCGATATTAAATGGCACACCGAGCCCCATATCACAGGAACGTTGGTACAGCAA 210313 Query 97209 ACAGGAAAG-------------CTT-----TCCATC---------ACACACATAAAACTG 97241 || ||||| ||| ||| || || |||||||| || Sbjct 210314 GCACGAAAGGCGAGGTTTACCACTTCCACTTCCCTCTTTGGGGAAACTGACATAAAATTG 210373 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 || | || || || || || ||||| || || |||| |||||||| | Sbjct 210374 TGAAAAAATGTGGCATGGCGGTAAGGCCATCTTGTCAAAATCTGCAGGGTTCCAAGCGCT 210433 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTG 97361 ||| | ||||||||||| |||||||| | || | | || | |||||| | || Sbjct 210434 CATGATGATTCTTCTATCATAAGGGTTTGTCTTTAATTTGTGTATAACCTGCTTCAGCTG 210493 Query 97362 ATCAACGCCTTCTCCACCATA---ATTGT-GCTTAAGACCTTGATATTCTGCTCCAAAAT 97417 ||| | |||| ||| ||| || || || || |||| |||| || ||||||| Sbjct 210494 ATCGATACCTTGTCCGGTATAGTCATCGTCGC---AGGTCTTG-TATTTGGCACCAAAAT 210549 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA 97477 | ||||||||||| ||||||||||| || || || ||| ||| ||||| || || | Sbjct 210550 GTCTCCATTGGAACCCATAAACAGGACCCAGATCCCCTACTTTCCTATCCATGAGTCCCA 210609 Query 97478 GCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 ||| || ||||| | ||||||||| | |||||||| Sbjct 210610 TCTTGTCCAAATATTCACGAGATCCATTACCGTCCCAAAT 210649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346779359379860