Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq77 131 3e-25 seq166 129 1e-24 seq155 122 2e-22 seq49 84.2 4e-11 >seq77 Length=84601 Score = 131 bits (144), Expect = 3e-25 Identities = 231/335 (69%), Gaps = 20/335 (6%) Strand=Plus/Plus Query 35295 ATACAGACGCCAAAGAATTGGCCAAG-AAGAAGATACACATCTGGAACGCTAATGGGTCG 35353 |||||||||| || |||| | || ||| | || | || ||| ||| |||||| || Sbjct 55847 ATACAGACGCTAACCTATTGTCTGAGCAAGGTGTTA-AGATTTGGGACGGTAATGGATCT 55905 Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413 || |||| ||| || | | ||||| | ||||| || |||||| |||| ||||| Sbjct 55906 CGTGAATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTT 55965 Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473 || ||||| |||||| | |||||||||||| |||| | || || | ||| |||||| Sbjct 55966 TATGGATTTCAATGGAGGCATTTTGGTGCTAAATACAAGACGTGCGATGACGACTATACT 56025 Query 35474 GGAAAGGGTATTGATCAATTG-GCCA--------ATATACTAAAGACCCTGAGAGAAAAT 35524 ||| | ||||||||||||||| || ||| ||||||||| |||| Sbjct 56026 GGACAAGGTATTGATCAATTGAAACAGGTTATTCATAAACTAAAGAC---------AAAT 56076 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || | |||||||| || ||||||| || ||||| || ||| || || |||||| Sbjct 56077 CCCTACGATAGAAGAATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCT 56136 Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | || |||||||| || | | || || ||||| Sbjct 56137 TTGCCGCCATGCCATATTTTTTCACAGTTCTATGT 56171 >seq166 Length=41989 Score = 129 bits (142), Expect = 1e-24 Identities = 298/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| | ||||||| |||| || ||| | || || |||||||||||| Sbjct 7050 GTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGG 6991 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||||| |||| ||| | |||| ||||| || || || | ||| ||| Sbjct 6990 TTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGAC 6931 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||||||| || |||| | |||| || | | Sbjct 6930 GAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---ACAA 6878 Query 102098 TCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || ||| ||| |||||||||| || || || |||||||||| || Sbjct 6877 ACCAGACCCAGCCATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATA 6818 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | || | || ||| || | || |||||| | || |||| ||| || Sbjct 6817 CTTCTTGGACGCCTTACCAGTTGCTTTGCTAGGTATGAACGCTGACTTAATGAACCAATA 6758 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271 | |||| || || || || | ||| ||||||| | || || ||||| |||| || Sbjct 6757 CGTTGAGTTCGTCGCCGACAGACTGTTGGTTGCTTTCGGTAACAAGAAA--TACTACAAG 6700 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || ||||||||| |||||||| || || ||| | | |||||| ||||| || Sbjct 6699 GTCGAAAACCCCTTCGATTTCATGGAAAACATCTCCTTGGCCGGTAAGACTAACTTCTTC 6640 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 6639 GAAAAGAGAGTTTCTGACTACCAA 6616 >seq155 Length=44513 Score = 122 bits (134), Expect = 2e-22 Identities = 271/402 (67%), Gaps = 15/402 (4%) Strand=Plus/Minus Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 ||||| ||||| |||||| | ||||| || ||||| |||| || | |||| |||||| Sbjct 43542 TTCGCCTCCATCTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGGTTGACCTTCTCCAAC 43483 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAG 102079 ||||| || | || ||||||||| | || ||||||||| || || |||| | Sbjct 43482 GAGTTGATCTGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTCGCCCA- 43424 Query 102080 GGTTTTGTTGATA---CCCCATCAAGAGAAAGGATTCTTGAAATT-GTCACTGAAGCCGT 102135 |||| || || | | || | | || |||| | ||||| || ||||| Sbjct 43423 ---TTTGAAGAACAAGCCGGACCCAGCCATCG---TCGAGAAAATCGTCACCGAGGCCGT 43370 Query 102136 CCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTG 102195 | || |||||| || || || || |||| || || | || ||||| Sbjct 43369 CGAGATCGAACAAAGATACTTCCTAGACGCCTTGCCAGTCGCCTTGCTAGGTATGAATGC 43310 Query 102196 CAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--A 102253 | | ||||||| ||||||| | || || || ||||| | ||| ||||| | | || | Sbjct 43309 CGACTTGATGAACCAGTACGTCGAGTTCGTCGCAGACAGACTGTTGGTCGCCTTCGGTAA 43250 Query 102254 CTAGAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAG 102313 | |||| | |||| || || |||||||||| |||||||| || |||||| | | Sbjct 43249 CAAGAA--GTACTACAAGGTCGACAACCCCTTCGATTTCATGGAAAACATTTCCTTGGCC 43192 Query 102314 AATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 |||||||||||| || |||||||||||| |||| || ||| Sbjct 43191 GGTAAGACCAACTTCTTCGAAAAGAGAGTCTCCGACTACCAA 43150 >seq49 Length=112061 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || || ||||||||||| || || || ||| || | ||| || |||||||| |||||| Sbjct 30998 CCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATG 31057 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910 || || | | | | | ||||| || || || | ||| || |||| | || || Sbjct 31058 GAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGC-GTACCGGC 31116 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 |||||| |||||||||||||| ||||| || || | |||||| | | || || | Sbjct 31117 ATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTT 31176 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCAT 95018 | || || | ||| || |||||||| || | ||||||||||| Sbjct 31177 CAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCAT 31224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989570078408590