Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq147 118 1e-21 seq111 82.4 8e-11 >seq147 Length=47883 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || || || | |||||||||||| |||||||||||||| | Sbjct 15809 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 15868 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| || || ||||| ||| | |||| | ||| ||||| ||||| Sbjct 15869 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 15928 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| |||| | | || | ||||||| | || || Sbjct 15929 ATACCTTCCTTGTC-TTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 15987 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||| || || | ||||| ||||| ||||||||| Sbjct 15988 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 16036 >seq111 Length=63476 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| |||||||||||||| || || || || |||||| Sbjct 63272 ACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCCGACAAAGTTCTGCCGTCTTCC 63331 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || || ||||| ||| | |||| | || || || ||||| ||||| ||||| || Sbjct 63332 AGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGAATGCCCTCTTTATCCTGT 63391 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||||| || ||| ||||| | || | ||||| Sbjct 63392 ATCTTACTCTTTACATTGTCGATCGTGTCGGAGGACTCGACCTCCAAAGTAATGGTCTTA 63451 Query 139736 CCGGTCAACGTTTTTACGAATAT 139758 ||||| || || || ||||| || Sbjct 63452 CCGGTTAAAGTCTTGACGAAAAT 63474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057191521600