Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 122 1e-23 seq152 109 9e-20 seq255 95.1 2e-15 seq639 86.0 1e-12 >seq9 Length=250141 Score = 122 bits (134), Expect = 1e-23 Identities = 191/271 (70%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| ||| |||||||||| ||||| ||||| ||||||||||| Sbjct 38680 GCTAAGCGTCACAGAAAGAT-TCTAAGAGATAACATTCAAGGTATCACTAAGCCAGCTAT 38738 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | ||||| | | ||||| ||||||||| |||| || || |||| ||||| | Sbjct 38739 CAGAAGATTGGCTAGAAGAGGTGGTGTCAAGCGTATCTCCGGTTTAATCTACGAAGAAGT 38798 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||||| |||| | | |||| ||| || || | || || || Sbjct 38799 CAGAGCTGTCTTGAAGTCCTTCTTGGAATCCGTCATCAGAGACTCTGTTACTTACACTGA 38858 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || || | ||| | || ||||| ||||| | ||||| Sbjct 38859 ACACGCCAAGAGAAAGACTGTTACTTCTCTAGATGTTGTTTATGCTTTGAAGAGACAAGG 38918 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | | |||||||| || |||||||| Sbjct 38919 TAGAACCTTGTATGGTTTCGGTGGTTAATCT 38949 >seq152 Length=46322 Score = 109 bits (120), Expect = 9e-20 Identities = 187/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||||||||| ||||| || || ||||||||||| Sbjct 38682 GCCAAGCGTCACAGAAAGAT-TCTAAGAGATAACATACAAGGTATTACTAAGCCAGCTAT 38740 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | | ||| | | ||||| ||||||||| | ||||| ||| |||| ||||| | Sbjct 38741 CAGAAGATTAGCTAGAAGAGGTGGTGTCAAGCGTATTTCTGGTTTGATCTACGAAGAAGT 38800 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| ||||| |||| | | |||| ||| || || | || ||||| Sbjct 38801 CAGAGCTGTCTTGAAATCCTTCTTGGAATCCGTCATCAGAGACTCTGTTACTTACACCGA 38860 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || || ||||| | || ||||| ||||| | ||||| Sbjct 38861 ACACGCCAAGAGAAAGACTGTTACTTCTTTGGATGTTGTTTATGCTTTGAAGAGACAAGG 38920 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||| || |||||| Sbjct 38921 TAGAACCTTATACGGTTTCGGTGGTTAAT 38949 >seq255 Length=24412 Score = 95.1 bits (104), Expect = 2e-15 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| ||||| |||||||||||| | | ||||| | | ||||| | Sbjct 21570 GAGATAACATTCAAGGTATCACTAAGCCAGCTATCAGAAGATTGGCTAGAAGAGGTGGTG 21511 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| |||| || || |||| ||||| | | | ||| |||||| ||| | Sbjct 21510 TCAAGCGTATCTCCGGTTTAATCTACGAAGAAGTCAGAGCTGTCTTGAAGTCCTTTTTGG 21451 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | |||| ||| || || | || || || ||||| || | |||||||| || | Sbjct 21450 AATCCGTCATCAGAGACTCTGTTACTTACACTGAACACGCCAAGAGAAAGACTGTTACTT 21391 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | | ||| | || || || ||||| | ||||| | | | || ||||| || ||| Sbjct 21390 CTCTAGATGTTGTTTACGCTTTGAAGAGACAAGGTAGAACCTTATACGGTTTCGGTGGTT 21331 Query 16698 AA 16699 || Sbjct 21330 AA 21329 >seq639 Length=663 Score = 86.0 bits (94), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||||||||| ||||| ||||| ||||||||||| Sbjct 214 GCCAAGCGTCACAGAAAGAT-TCTAAGAGATAACATTCAAGGTATCACTAAGCCAGCTAT 156 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | | ||| | | ||||| ||||||||| | ||||| ||| |||| ||||| | Sbjct 155 CAGAAGATTAGCTAGAAGAGGTGGTGTCAAGCGTATTTCTGGTTTGATCTACGAAGAAGT 96 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || ||||| |||| | | |||| ||| || || | || || || Sbjct 95 CAGAGCCGTCTTGAAATCCTTCTTGGAATCCGTCATCAGGGACTCTGTTACTTACACTGA 36 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 ||||| || | |||||||| || || ||||| Sbjct 35 ACACGCCAAGAGAAAGACTGTTACTTCTTTGGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074196090914