Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq17 109 5e-19 seq155 107 2e-18 seq99 107 2e-18 seq147 96.9 3e-15 seq111 95.1 1e-14 seq61 87.8 2e-12 seq41 82.4 8e-11 >seq17 Length=175543 Score = 109 bits (120), Expect = 5e-19 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||||||||||| | || |||||||| || |||||||| | Sbjct 134277 CCACCTCTCAATCTCAAAACTAAATGTAAAGTGGATTCCTTTTGGATATTGTAGTCAGAC 134336 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||| ||||| | | |||||| | |||||||| ||||| Sbjct 134337 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGA 134396 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | |||| || |||| || | |||||| | || || | Sbjct 134397 ATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTG-TCAATGGTGTCAGAAGATTCAA 134454 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | || | || | || |||||||||| |||||| |||||| Sbjct 134455 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAA 134495 >seq155 Length=44513 Score = 107 bits (118), Expect = 2e-18 Identities = 291/437 (67%), Gaps = 9/437 (2%) Strand=Plus/Minus Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463 || |||||||| |||| || || || || ||||| ||| ||| ||||||| | Sbjct 43584 GTCGCCTTCGCGTCCATCGAAGGTGTTTTCTTCTCCGGGTCCTTCGCCTCCATCTTCTGG 43525 Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523 | || | || ||| || |||||||| |||| ||| |||||||||||| | | ||| Sbjct 43524 TTGAAGAAGAGAGGTATGATGCCCGGGTTGACCTTCTCCAACGAGTTGATCTGCAGAGAC 43465 Query 52524 GAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 ||||| ||||||| |||||||| || | | | | | | ||| | || | Sbjct 43464 GAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTC---GCCCATTTGAAGAACAAGCCG 43408 Query 52584 GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA-AAGGAGTTTTT 52642 || | | || || || || ||| ||||| || | |||||| || || | || Sbjct 43407 GACCCAGCCATCGTCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACAAAGA-TACTT 43349 Query 52643 TACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACAT 52702 | ||| |||| |||| |||| || ||||| || | | ||| | ||||| | Sbjct 43348 CCTAGACGCCTTGCCAGTCGCCTTGCTAGGTATGAATGCCGACTTGATGAACCAGTACGT 43289 Query 52703 CGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTC 52761 |||||| || || || | |||||||| | || || | | | ||||||| ||| | || Sbjct 43288 CGAGTTCGTCGCAGACAGACTGTTGGT-CGCCTTCGGTAACAAGAAGTACTACAA-GGTC 43231 Query 52762 G-CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG 52820 | ||| || || || || ||| | |||||||| | | || ||||||||||| ||||| Sbjct 43230 GACAACCCCTTCGATTTCATGGAAAACATTTCCTTGGCCGGTAAGACCAACTTCTTCGAA 43171 Query 52821 AAGCGAGTCGGCGAGTA 52837 ||| ||||| ||| || Sbjct 43170 AAGAGAGTCTCCGACTA 43154 >seq99 Length=71790 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| |||||||||| | || ||||||||||||||||||||| | Sbjct 32471 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 32412 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||| ||||| | | |||| | | |||||||| || || Sbjct 32411 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 32352 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| | || | ||| | |||| | | |||||| | || || | Sbjct 32351 ATACCTTCTTTGTCT-TGAATCTTGGATTTGACATTGT-CAATGGTGTCAGAAGATTCAA 32294 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 | || | || | ||||||||||||| ||| || || || Sbjct 32293 CTTCTAGAGTGATGGTTTTACCAGTCAAAGTCTTAACGAA 32254 >seq147 Length=47883 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || ||||| ||||||||||| || | Sbjct 16037 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGAC 16096 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || || ||||||| | |||| | | ||||| || ||||| Sbjct 16097 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 16156 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | |||| ||| || | ||| |||| || || | Sbjct 16157 ATACCTTCCTTGTC-TTGAATTTTCGACTTAACGTTG-TCGATGGTATCGGAAGATTCAA 16214 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | |||||||| |||| ||| || ||||| |||||||| Sbjct 16215 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 16263 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| ||||||||||| | Sbjct 16265 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 16324 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | || ||||||| | |||| | | ||||| || ||||| Sbjct 16325 AAGGTTCTACCGTCTTCTAACTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 16384 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | |||| ||| || | ||| |||| || || | Sbjct 16385 ATACCTTCCTTGTC-TTGAATTTTCGACTTAACGTTG-TCGATGGTATCGGAAGATTCAA 16442 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | |||||||| |||| ||| || || ||||||||||| Sbjct 16443 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 16491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||| ||||||| | Sbjct 15614 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCA 15673 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | || ||||| ||||| |||||||| ||||| ||| |||| | |||| Sbjct 15674 AAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGACTTAAC 15732 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| || || ||||| | || | || || || || ||||||| Sbjct 15733 GTTG-TCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTT 15791 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 15792 TGACGAAAATTTGCAT 15807 >seq111 Length=63476 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||| ||||| || ||| | ||| || ||||| ||||||| | Sbjct 63287 GACTCCTTTTGAATGTTATAGTCCGACAAAGTTCTGCCGTCTTCCAGTTGCTTACCGGCA 63346 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT-CGGTGATTTTTTGTTTTAA 138539 | || | | ||||||||||||||| || || ||||| | | || || | ||| | Sbjct 63347 AAAATCAACCTCTGTTGGTCCGGAGGAATGCCCTCTTTATCCTGTATCTTACTCTTTACA 63406 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||| | || | || ||||| || | ||| || Sbjct 63407 TTG-TCGATCGTGTCGGAGGACTCGACCTCCAAAGTAATGGTCTTACCGGTTAAAGTCTT 63465 Query 138600 TACAAAAATCT 138610 || ||||||| Sbjct 63466 GACGAAAATCT 63476 >seq61 Length=97283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| || |||| | ||||||||||| ||||||||||| | Sbjct 94336 CCACCTCTCAATCTCAAAACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 94395 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || | ||| ||||| | | |||| | | |||||||| || || Sbjct 94396 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 94455 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || |||| || | ||||| | || || | Sbjct 94456 ATACCTTCCTTGTC-TTGAATCTTAGACTTGACATTG-TCAATAGTGTCTGAAGATTCAA 94513 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || ||||| || | ||| || || ||||| ||||| Sbjct 94514 CTTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 94562 >seq41 Length=123922 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| ||||| || | | || || ||||||||||||||||| | Sbjct 80807 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 80866 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||| ||||| | | |||| | | |||||||| || || Sbjct 80867 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 80926 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | |||| || |||| || | ||||| | || || | Sbjct 80927 ATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTG-TCAATAGTGTCAGAAGATTCAA 80984 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | || | || | || |||||||||| ||| || |||||| Sbjct 80985 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 81025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255588798560