Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq34 125 8e-24 seq13 116 4e-21 >seq34 Length=134357 Score = 125 bits (138), Expect = 8e-24 Identities = 323/488 (66%), Gaps = 12/488 (2%) Strand=Plus/Minus Query 154602 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 154661 || ||||| || ||| ||| || |||||||| || |||| | || ||||| ||| | Sbjct 129220 ATTACAGGTTTCGATGGTATTTCTTTACAACCAAATTCAGGTGCTCAAGGTGAATATACT 129161 Query 154662 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 154721 || ||| || |||| | | |||| || | ||| || || | | || || ||| Sbjct 129160 GGTCTGAGAGTAATCAGATCCTACCTGGAAAGCAAAGGTGAAAATCATCGTAACGTGTGT 129101 Query 154722 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAA 154781 || || || | || || ||||| || ||||| ||| ||| | ||||| || | ||| Sbjct 129100 TTAATCCCTGTATCCGCTCATGGTACAAATCCGGCTTCTGCCGCTATGGCGGGTTTAAAA 129041 Query 154782 GTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAA 154841 ||||| |||||| ||| | ||||| |||| | || || |||| || Sbjct 129040 GTTGTTCCTGTCAACTGTTTGCAGGATGGCTCATTAGATCTGGTTGACTTAAAGAATAAG 128981 Query 154842 GCAATCATGAATA-CATTT----GAACTGTCATGTATTATGATTACATACCCATCTACAC 154896 || |||| | |||| ||||| | | ||||| || || || ||||| Sbjct 128980 GC-----TGAACAACATTCTAAAGAACTAGCCGCCGTAATGATCACCTATCCTTCTACTT 128926 Query 154897 ATGGTGTATTTGAAACTAACATTAGACA-GATATGTAAGATCGTTCATGACAATGGTGGT 154955 | ||| |||||||| | ||| ||| | ||| | | ||||| ||| |||||| Sbjct 128925 ACGGTTTATTTGAACCAGGCATCCAACATGCTAT-TGATATCGTACATTCTTTTGGTGGA 128867 Query 154956 CAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAG 155015 || || ||| | ||||| || ||| | ||||| ||||| || ||| | ||| | || Sbjct 128866 CAAGTCTATTTGGATGGTGCTAATATGAATGCGCAGGTTGGGCTAACTTCACCCGGAGAT 128807 Query 155016 TATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGT 155075 |||||||||||| || || | || |||||||| ||||||| ||||| ||||| ||| Sbjct 128806 CTTGGTGCAGATGTTTGCCACTTGAATTTACATAAGACATTCTCCATTCCTCATGGTGGT 128747 Query 155076 GGAGGTCC 155083 || ||||| Sbjct 128746 GGTGGTCC 128739 >seq13 Length=201911 Score = 116 bits (128), Expect = 4e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 |||| ||| | |||||||| || || ||| || ||||| || || ||||| | | | Sbjct 28173 TTATTGGTAAGGGATACTACGGCACGATTTTGCCGCCAGTTATTCAAAGAAACCTATTGG 28232 Query 153265 AGAATCCTAGT-TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 | || || || |||||||| ||||| ||||| || || |||| ||||||||||| ||| Sbjct 28233 A-AAGCCCAGAATGGTACACTTCTTATACTCCATACCAGCCTGAAATATCTCAGGGTAGA 28291 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 |||||||| ||| | || | |||||| | | | || | || || || || | ||| Sbjct 28292 TTGGAAGCATTACTAAACTTCCAAACAGTAGTTTCCGATTTGACTGGTTTGCCTGTGGCA 28351 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATAAT 153443 ||||| || | || ||||||| || || || | ||||| |||||| | ||| |||| Sbjct 28352 AACGCCTCATTGTTGGATGAAGGTACCGCGGCTGGTGAAGCTATGCTACTGTCATTTAAT 28411 Query 153444 TCTACAAGAGATAAGAAG 153461 | | ||| | || ||| Sbjct 28412 ATTTCCAGAAAGAAAAAG 28429 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||| ||| |||| ||||| ||||| |||||||||||||| || || || | Sbjct 28757 CAAAGGTTCGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTCGCCGTTATT 28816 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || || || ||||| || |||||||||||||| ||| || || | |||| Sbjct 28817 GATAAACTGAACAGAAAAATTCCTGGCAGAATTGTTGGTATCTCCAAGGACCGCCTAGGT 28876 Query 153888 AATAAAG-CATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGC 153946 ||| | | ||| | ||||| |||| |||||||| ||||| || | | || ||||| Sbjct 28877 AATCCTGCCCTAC-GTTTAGCTTTACAAACTAGAGAACAGCACATTAAACGTGATAAAGC 28935 Query 153947 AACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 ||| ||||| ||||| ||||| || || |||||||| Sbjct 28936 AACTTCAAACATTTGCACCGCTCAAGCCCTTTTGGCTAAT 28975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579204850304320