Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq34 149 7e-31 seq13 111 2e-19 >seq34 Length=134357 Score = 149 bits (164), Expect = 7e-31 Identities = 338/504 (67%), Gaps = 12/504 (2%) Strand=Plus/Minus Query 159277 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 159336 || ||||| || ||| ||| || |||||||| || |||| | || ||||| ||| | Sbjct 129220 ATTACAGGTTTCGATGGTATTTCTTTACAACCAAATTCAGGTGCTCAAGGTGAATATACT 129161 Query 159337 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 159396 || ||| || |||| | | |||| || | ||| || || | | || || ||| Sbjct 129160 GGTCTGAGAGTAATCAGATCCTACCTGGAAAGCAAAGGTGAAAATCATCGTAACGTGTGT 129101 Query 159397 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAA 159456 || || || | || || ||||| || ||||| || || || | ||||| || | ||| Sbjct 129100 TTAATCCCTGTATCCGCTCATGGTACAAATCCGGCTTCTGCCGCTATGGCGGGTTTAAAA 129041 Query 159457 GTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAA 159516 ||||| |||||| ||| | |||||| |||| | || || |||| || Sbjct 129040 GTTGTTCCTGTCAACTGTTTGCAGGATGGCTCATTAGATCTGGTTGACTTAAAGAATAAG 128981 Query 159517 GCAATCATGAATA-CATTT----GAACTGTCATGTATTATGATTACATATCCATCTACAC 159571 || |||| | |||| ||||| | | ||||| || ||||| ||||| Sbjct 128980 GC-----TGAACAACATTCTAAAGAACTAGCCGCCGTAATGATCACCTATCCTTCTACTT 128926 Query 159572 ATGGTGTATTTGAAACAAACATCAGACA-GATATGTAAGATTGTTCATGAGAATGGTGGT 159630 | ||| |||||||| || |||| ||| | ||| | | || || ||| |||||| Sbjct 128925 ACGGTTTATTTGAACCAGGCATCCAACATGCTAT-TGATATCGTACATTCTTTTGGTGGA 128867 Query 159631 CAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGAC 159690 || || ||| | |||||||| ||| | ||||| ||||| || ||| | ||| | || Sbjct 128866 CAAGTCTATTTGGATGGTGCTAATATGAATGCGCAGGTTGGGCTAACTTCACCCGGAGAT 128807 Query 159691 TATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGT 159750 |||||||||||| || || | || |||||||||||||||| ||||| ||||| ||| Sbjct 128806 CTTGGTGCAGATGTTTGCCACTTGAATTTACATAAGACATTCTCCATTCCTCATGGTGGT 128747 Query 159751 GGAGGTCCTGGCGTAGGTCCTATT 159774 || ||||| | | || ||| ||| Sbjct 128746 GGTGGTCCAGCTGGAGCTCCCATT 128723 >seq13 Length=201911 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||| ||| |||| ||||| || || |||||||||||||| || || || | Sbjct 28757 CAAAGGTTCGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTCGCCGTTATT 28816 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 || || || ||||| || |||||||||||||| ||| || || || |||| Sbjct 28817 GATAAACTGAACAGAAAAATTCCTGGCAGAATTGTTGGTATCTCCAAGGACCGCCTAGGT 28876 Query 158563 AATAAAG-CATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGC 158621 ||| | | ||| | ||||| |||| |||||||| ||||| || | | | || ||||| Sbjct 28877 AATCCTGCCCTAC-GTTTAGCTTTACAAACTAGAGAACAGCACATTAAACGTGATAAAGC 28935 Query 158622 AACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 ||| ||||| ||||| || ||||| || |||||||| Sbjct 28936 AACTTCAAACATTTGCACCGCTCAAGCCCTTTTGGCTAAT 28975 Score = 102 bits (112), Expect = 1e-16 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 157880 TTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTG 157939 |||| ||| | |||||||| || || || || ||||| || || ||||| | | | Sbjct 28173 TTATTGGTAAGGGATACTACGGCACGATTTTGCCGCCAGTTATTCAAAGAAACCTATTGG 28232 Query 157940 AGAATCCTAGT-TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 | || || || |||||||| ||||| ||||| || || |||| ||||||||||| ||| Sbjct 28233 A-AAGCCCAGAATGGTACACTTCTTATACTCCATACCAGCCTGAAATATCTCAGGGTAGA 28291 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 |||||||| ||| | || | |||||| | | | || | || || | || | ||| Sbjct 28292 TTGGAAGCATTACTAAACTTCCAAACAGTAGTTTCCGATTTGACTGGTTTGCCTGTGGCA 28351 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAAT 158118 ||||| || | || ||||||| || || || | ||||| ||||| | ||| |||| Sbjct 28352 AACGCCTCATTGTTGGATGAAGGTACCGCGGCTGGTGAAGCTATGCTACTGTCATTTAAT 28411 Query 158119 TCTACAAGAGATAAGAAG 158136 | | ||| | || ||| Sbjct 28412 ATTTCCAGAAAGAAAAAG 28429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588043128997280