Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17 123 6e-23 seq58 122 2e-22 seq41 120 7e-22 seq147 114 3e-20 seq61 107 5e-18 seq99 104 6e-17 seq72 95.1 3e-14 >seq17 Length=175543 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || || || |||||||||||||| ||| ||||||||| | Sbjct 134495 TTTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCAT 134436 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| |||||||||||| || ||||| ||| || ||| |||||| | Sbjct 134435 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAAAGATT 134376 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || || ||||| |||||||| || || || ||| | || ||||| |||| || Sbjct 134375 AATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAATATCCAAAA 134316 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || ||| | || | ||||||||| Sbjct 134315 GGAATCCACTTTACATTTAGTTTTGAGA 134288 >seq58 Length=101919 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || ||||||| ||| ||||||||| | || || ||| Sbjct 8422 ACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCC 8481 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || ||| |||||| | ||||| || || ||| Sbjct 8482 AAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 8541 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || |||||| |||| |||||| |||| || || |||||||| ||| Sbjct 8542 CAATTGGAAGATGGTAGAACTTTGTCCGACTACAACATCCAAAAGGAATCTACTCTACAC 8601 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 8602 TTGGTCTTGAGA 8613 >seq41 Length=123922 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || |||||||||||||| ||| ||||||||| | Sbjct 81025 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 80966 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| |||||||||||| || ||||| || || ||| |||||| | Sbjct 80965 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 80906 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || || ||||| |||||||| || || || ||| | || |||||| | || || Sbjct 80905 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAA 80846 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||| || ||| | ||| | || |||||| Sbjct 80845 AGAATCCACTTTGCACTTAGTCTTGAGA 80818 >seq147 Length=47883 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| || || |||||||| ||| ||| || Sbjct 16488 CAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCCGAT 16429 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| || ||||| || || || ||| Sbjct 16428 ACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAACAA 16369 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| |||||||| ||||| || || || ||| | || |||||| || Sbjct 16368 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACCTTGTCTGACTACAACATC 16309 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || |||||||||||| | || |||||| Sbjct 16308 CAAAAGGAATCTACTCTTCACTTGGTGTTGAGA 16276 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| || || |||||||| ||| ||| || Sbjct 16260 CAGATCTTTGTTAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCCGAT 16201 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| || ||||| || || || ||| Sbjct 16200 ACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAACAA 16141 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| |||||| | ||||| || || || || | ||||||||| | Sbjct 16140 AGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAACATT 16081 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| || |||||||||||| | || |||||| Sbjct 16080 CAGAAGGAATCTACTCTTCACTTGGTGTTGAGA 16048 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || ||||| || || || || | || || ||| ||| ||||| | || Sbjct 15793 CAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAA 15734 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| || ||||| ||| || ||| |||||| | || || Sbjct 15733 CGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTT 15674 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| | |||||||| || || || | || ||||| | || || ||||| Sbjct 15673 TGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTC 15614 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 |||||||||||||| ||||| Sbjct 15613 CACTCTTCACCTTGTCTTGAG 15593 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || ||||| || || || || | || || ||| ||| ||||| | || Sbjct 16021 CAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAA 15962 Query 206244 AGT--AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || |||| |||| ||||||| || ||||| ||| || || |||||| | || Sbjct 15961 CGTCAAAAGTAAAA--TTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATT 15904 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || ||||| ||||| ||||||| || || || || | ||||| ||| | ||||||||| Sbjct 15903 TTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAG 15844 Query 206362 TCTACTCTTCACCTTGTTTTGAGA 206385 ||||| | || | || |||||| Sbjct 15843 TCTACGTTGCATTTGGTGTTGAGA 15820 >seq61 Length=97283 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || | ||||| ||| ||| ||||| | || || ||| Sbjct 94538 ACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCAGACACTATTGACAATGTCAAGTCT 94479 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || ||| |||||| | ||||| || || ||| Sbjct 94478 AAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 94419 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || |||||| | || |||||| |||| || ||||| ||| | ||| Sbjct 94418 CAATTGGAAGACGGCAGAACTTTGTCTGACTACAACATCCAAAAGGAGTCCACTTTACAC 94359 Query 206374 CTTGTTTTGAGA 206385 | ||||||||| Sbjct 94358 TTGGTTTTGAGA 94347 >seq99 Length=71790 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| |||||| | ||||| ||| ||||||||| | || || || Sbjct 32269 ACTGGTAAAACCATCACTCTAGAAGTTGAATCTTCTGACACCATTGACAATGTCAAATCC 32328 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| || || ||| |||||| | ||||| || || ||| Sbjct 32329 AAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 32388 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || || ||| |||| |||||| | || || || || ||| | || Sbjct 32389 CAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACAT 32448 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 32449 TTAGTCTTGAGA 32460 >seq72 Length=88957 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||||||||||| ||| ||||||||| | || || ||| Sbjct 26851 ACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACAATGTCAAGTCC 26910 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || || |||||| | ||||| || || ||| Sbjct 26911 AAGATCCAAGACAAGGAAGGTATCCCACCTGATCAACAAAGATTGATCTTTGCTGGTAAG 26970 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || ||| | | || |||||| |||| || || || ||| | || Sbjct 26971 CAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAATCCACTTTACAT 27030 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 27031 TTGGTCTTGAGA 27042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181804173997258