Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq180 145 6e-30 seq30 134 1e-26 seq77 96.9 3e-15 >seq180 Length=38731 Score = 145 bits (160), Expect = 6e-30 Identities = 376/567 (66%), Gaps = 16/567 (3%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA 19419 || || || || ||| ||| |||||||||||||| ||| || | ||| | | || | | Sbjct 35689 TACGGTCCTCCAGGTACTGGTAAAACATTAATTGCAAGAAAAATCGGTACAATGCTGA-A 35631 Query 19420 AAACAACCTCCCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||| ||||| ||||| || ||||||||| | |||| ||| ||||| ||| || Sbjct 35630 CGCCAAAGAGCCAAAGATTGTTAACGGTCCTGAAGTTTTAAGTAAGTATGTTGGTTCCTC 35571 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 |||||||| | || ||| || ||||| |||| |||| | || | |||| | Sbjct 35570 AGAAGAAAACATCCGTAATTTATTCAAAGACGCAGAAGCAGAATACAAG-GCCAAGGGGG 35512 Query 19539 CAAAAG-TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597 || ||| || || || || || | |||||| |||| | | | ||||| |||| Sbjct 35511 ATGAATCTTCCTTACATATCATCATTTTTGATGAACTGGATTCTGTTTTCAAGCAGAGAG 35452 Query 19598 GTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651 |||| || || | ||| ||| ||||| ||| || |||||| | ||| | ||| Sbjct 35451 GTTCAAGAGGTGATGGTACTGGTGTAGGTGACAATGTAGTTAATCAATTGCTGGCTAAAA 35392 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 | ||||||||| | |||||||||||||| || || ||||| ||||| || | || | Sbjct 35391 TGGACGGTGTTGATCAACTGAATAATATATTGGTCATTGGTATGACCAACCGTAAAGATT 35332 Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTAC 19771 | || || | || | ||||| || ||| | || ||| | || | |||||| | |||| Sbjct 35331 TGATCGATATTGCTCTTTTACGTCCAGGTAGATTCGAAGTTCAGGTTGAAATTCATTTAC 35272 Query 19772 CCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATA 19831 | || ||| || | || | ||||| | || || ||| || ||| || |||| | Sbjct 35271 CGGACGAAAAAGGTAGACTGCAGATTTTTGAAATTCAGACAAAAAAAATGAGAGAAAACA 35212 Query 19832 ACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCT---ACCAAAAACTATA 19888 | | | | |||||||| | | | || | ||||||| || || || | | Sbjct 35211 ATATGATGAGCGACGATGTTAACTTGGCTGAGTT---AGCGGCTTTAACTAACAATTTTT 35155 Query 19889 GCGGCGCAGAACTTGAGGGATTAGTGA 19915 ||| || ||| |||| || ||||||| Sbjct 35154 CCGGTGCTGAAATTGAAGGTTTAGTGA 35128 >seq30 Length=148487 Score = 134 bits (148), Expect = 1e-26 Identities = 447/690 (65%), Gaps = 34/690 (5%) Strand=Plus/Minus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 72745 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 72686 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 72685 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 72632 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 72631 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 72572 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | || || || ||| Sbjct 72571 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGCAAGTACGTTGGTTCT 72515 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || |||||||| | || ||| ||| || || |||| |||| | | || | | Sbjct 72514 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGGGCCAAGGGT 72455 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || ||| || || ||||| || | ||||| |||| | | | |||| Sbjct 72454 GAGG-----AATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGC 72400 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | ||| ||| |||| ||| || |||||| | | Sbjct 72399 AGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAG 72340 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | || ||||||||||||| |||||||| ||||| ||| | Sbjct 72339 CTAAAATGGATGGTGTTGATCAGTTGAATAATATTTTGGTTATTGGTATGACCAATCGTA 72280 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || ||||||||||| || | || || || ||| | || ||| | | | |||||| Sbjct 72279 AAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 72220 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGAC 19825 | |||||||||||| ||| | | ||||||| |||| || || | ||| | Sbjct 72219 ATTTACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGACGAAGAAAATGAGGG 72160 Query 19826 AAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 ||||||| | | | |||||||| | ||| || | || || || ||||||| Sbjct 72159 AAAATAATATGATGAGCGACGATGTTAACTTAGCTGAGTTAGCTGCATTAACAAAAAACT 72100 Query 19886 ATAGCGGCGCAGAACTTGAGGGATTAGTGA 19915 || || || ||||||| ||||||| Sbjct 72099 TCTCTGGTGCTGAGATTGAGGGTTTAGTGA 72070 >seq77 Length=84601 Score = 96.9 bits (106), Expect = 3e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || ||||| |||||| ||| | || |||| ||||| | || || || |||||||| Sbjct 56212 CTTTCATGCTTATTGTACCAACGTTCTTGTGATATGGGGTTGGGAGTACCATTTAACATT 56271 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || |||||| || | || |||||||| | ||| | | | | || ||||| Sbjct 56272 GCATCATATGCTTTGTTGACTAGAATGATTGCTAAAGTTGTCGACATGGAGCCAGGTGAG 56331 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282 || |||| || || || |||| |||| |||| | | ||||| || | || | |||| Sbjct 56332 TTCATTCATACTTTGGGGGATGCACATGTTTATAAAGACCACATTGATGCCTTGAAAGAA 56391 Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342 ||| | || |||| || |||||||| || | ||| |||||| | | ||| || || Sbjct 56392 CAAATCACCAGAAATCCAAGACCATTCCCGAAACTAAAGATTAAAAGGGACGTTAAAGAC 56451 Query 41343 ATTGATGATTT 41353 ||||||||||| Sbjct 56452 ATTGATGATTT 56462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450681293490