Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001640265.1_202016- 05-08] 1,098 sequences; 22,339,351 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq147 136 3e-27 seq99 136 3e-27 seq17 120 2e-22 seq111 84.2 1e-11 >seq147 Length=47883 Score = 136 bits (150), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || || || || || || || || ||||| || | Sbjct 16035 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 15976 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| |||||| ||||| |||||| | || ||||||||| Sbjct 15975 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 15916 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAACGCACTTTAGGCGATTA 23786 || | || || |||||||| || |||||||||||| |||||| | | ||||| Sbjct 15915 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCT----GATTA 15860 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || |||||||| || || ||||| || || || ||| |||| || Sbjct 15859 TAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 15809 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || || | |||||||| || | Sbjct 16491 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 16432 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 16431 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 16373 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || | ||||||| | || || || ||||| Sbjct 16372 ACAAAGATTGATCTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACCTTGTCTGACTACAA 16313 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || || || ||| |||| || Sbjct 16312 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 16265 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || | || || ||||| || || | |||||||| || | Sbjct 16263 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 16204 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 16203 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 16145 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || || || ||||||| ||||| | | |||| Sbjct 16144 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCT----GATT 16089 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || || || || || | || || || || || ||| |||| || Sbjct 16088 ACAACATTCAGAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 16037 >seq99 Length=71790 Score = 136 bits (150), Expect = 3e-27 Identities = 167/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 |||||||| || | || || ||||| |||||||| |||||||| || | ||||| || Sbjct 32254 TTCGTTAAGACTTTGACTGGTAAAACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 32313 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | ||| | || | || |||||||||||| | || || || ||||| | || Sbjct 32314 GACAATGTCAAATCCAAGA-TTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATT 32372 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || ||||| || || ||| ||||||||| | || || ||| |||||||| ||||| Sbjct 32373 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAA 32432 Query 23799 AGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 || ||||| ||||||||||| || || ||| |||| || |||| Sbjct 32433 GGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTATCA 32476 >seq17 Length=175543 Score = 120 bits (132), Expect = 2e-22 Identities = 164/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678 ||| || ||||| | || || || || |||||| | |||||||| || | ||||| | Sbjct 134495 TTTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCAT 134436 Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 ||| ||| | || |||| | || ||||| |||||| | || || || ||||| | | Sbjct 134435 TGACAATGTCAAGTCAAAGA-TTCAAGACAAGGAAGGTATTCCTCCTGACCAACAAAGAT 134377 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 |||| ||||| || || ||| ||||||||| | || || || ||||| || |||| Sbjct 134376 TAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAATATCCAAA 134317 Query 23798 AAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 | || ||||| |||||||||||||| || ||| |||| || |||| Sbjct 134316 AGGAATCCACTTTACATTTAGTTTTGAGATTGAGAGGTGGTATCA 134272 >seq111 Length=63476 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23615 AGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACA 23674 |||||||||| || || | || || || || || ||| | || || || ||| | |||| Sbjct 63476 AGATTTTCGTCAAGACTTTAACCGGTAAGACCATTACTTTGGAGGTCGAGTCCTCCGACA 63417 Query 23675 CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGC 23734 | | || | |||| || || || ||||| || | || || || |||||| Sbjct 63416 CGATCGACAATGTAAAGAGTAAGATACAGGATAAAGAGGGCATTCCTCCGGACCAACAGA 63357 Query 23735 GTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATAC 23794 | || || |||||||| || ||||||||||||| | ||||| || || ||||| | Sbjct 63356 GGTTGATTTTTGCCGGTAAGCAACTGGAAGACGGCAGAACTTTGTCGGACTATAACATTC 63297 Query 23795 AAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| |||||||| | || || || |||| Sbjct 63296 AAAAGGAGTCCACTCTGCACTTGGTCCTAAG 63266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005076797784